View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_3 (Length: 526)
Name: NF16118_low_3
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Original strand, 3923852 - 3924352
Alignment:
| Q |
16 |
cagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgttccaaaccacatagacaacatgatagcccctct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923852 |
cagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgttccaaaccacatagacaacatgatagcccctct |
3923951 |
T |
|
| Q |
116 |
agcaaggttcgtaccagcttgatcctctaacatataccgttgaggtgccaatgaagattctggtggcaccctttttggaatatcaccaacagcgaacttt |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923952 |
agcaaggttcgtaccagcttgatcctctaacgtataccgttgaggtgccaatgaagattctggtggcaccctttttggaatatcaccaacagcgaacttt |
3924051 |
T |
|
| Q |
216 |
acatgaccaatgaacatacctgacgtcctgtctttcaagaaaacatctacgttgctagagctattttttccattatcaaaagcaaacacttggttcaatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924052 |
acatgaccaatgaacatacctgacgtcctgtctttcaagaaaacatctacgttgctagagctattttttccattatcaaaagcaaacacttggttcaatg |
3924151 |
T |
|
| Q |
316 |
atgagttgctggtttctaagaaaaatgttgttgcttttacgtttccaagtactacctctacatagagattatggatattgggaaagtctatgacctttac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924152 |
atgagttgctggtttctaagaaaaatgttgttgcttttgcgtttccaagtaccacctctacatagagattatggatattgggaaagtctatgacctttac |
3924251 |
T |
|
| Q |
416 |
aacccttacaaataagaactccatttcttcaacaaggtcatatctccttgtaagcttatcagcttcaaatgcagcattattgttaacactagtctccttt |
515 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924252 |
aacccttacaaataagaattccatttcttcaacaaggtcatatctccttgtaagcttatcagcttcaaatgcagcattattgttaacactagtctccttt |
3924351 |
T |
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| Q |
516 |
g |
516 |
Q |
| |
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| T |
3924352 |
g |
3924352 |
T |
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