View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16118_low_4 (Length: 470)

Name: NF16118_low_4
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16118_low_4
NF16118_low_4
[»] chr3 (11 HSPs)
chr3 (12-259)||(224717-224964)
chr3 (256-457)||(224485-224689)
chr3 (14-149)||(210345-210480)
chr3 (12-149)||(221893-222030)
chr3 (14-149)||(197070-197205)
chr3 (12-149)||(216948-217085)
chr3 (14-149)||(204988-205123)
chr3 (15-102)||(198274-198361)
chr3 (12-110)||(226108-226206)
chr3 (14-110)||(211665-211761)
chr3 (285-336)||(216723-216774)
[»] chr4 (2 HSPs)
chr4 (14-149)||(6903370-6903505)
chr4 (39-102)||(6904803-6904866)
[»] chr5 (1 HSPs)
chr5 (12-149)||(29838223-29838360)
[»] chr1 (1 HSPs)
chr1 (12-123)||(3808344-3808456)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 224964 - 224717
Alignment:
Q  12 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  224964 atgaagggaattcaaagtttagtgttattatatttgatgtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacac 224865  T
Q  112 caagtgtcctaggcctatgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttact 211  Q
      |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224864 agagtgtcctagacctacgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttact 224765  T
Q  212 tctacctataagtatagaactctggtgagtgaggattttagtttttaa 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  224764 tctacctataagtatagaactctggtgagtgaggattttagtttttaa 224717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 256 - 457
Target Start/End: Complemental strand, 224689 - 224485
Alignment:
Q  256 ttaaattgatgtgtcctccctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctcgaaaatt 355  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  224689 ttaaattgatgtgtcctacctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctccaaaatt 224590  T
Q  356 gcaat---ggagagcaatgggatgtttgttgtacacgtttaggtcgttcaggactgcgattggggaaaggattcattaaatttgcaacggacaacaattt 452  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  224589 gcaatggaggagagcaatgggatgtttgttgtacacgtttaggtcgttcaggactgcgattggggaaaggattcattaaatttgcaacgtacaacaattt 224490  T
Q  453 gtcaa 457  Q
    |||||    
T  224489 gtcaa 224485  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 210480 - 210345
Alignment:
Q  14 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 113  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  210480 gaagggaattcaaattttagcgttattatatttgatgcaacttctgttgaaatttgctatccattaaaaactccaagtactagtggagaaacaaacaccg 210381  T
Q  114 agtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
    ||||||||||||||||||||||||||| ||||||||    
T  210380 agtgtcctaggcctatgaaaaggtccaaggttgaaa 210345  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 222030 - 221893
Alignment:
Q  12 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 111  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||    
T  222030 atgaaggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatccattcaaaactcaaagtattaatggagaaacaaacac 221931  T
Q  112 caagtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
     ||||||| ||| |||| ||||||||||| ||||||||    
T  221930 aaagtgtcatagtcctaggaaaaggtccaaggttgaaa 221893  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 197205 - 197070
Alignment:
Q  14 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 113  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||  || ||||||| ||||||| |    
T  197205 gaagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggagaaccaaacacaa 197106  T
Q  114 agtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
    | ||| |||| |||| ||||||||||| ||||||||    
T  197105 aatgtgctagtcctacgaaaaggtccaaggttgaaa 197070  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 217085 - 216948
Alignment:
Q  12 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 111  Q
    |||||||| |||||||||||| |||  |||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||| | |||||||||||| ||    
T  217085 atgaaggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatccattcaaaactcaaagtacaaatggagaaacaaaaac 216986  T
Q  112 caagtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
     |||| || ||| |||| ||||||||||| ||||||||    
T  216985 aaagtttcatagtcctaggaaaaggtccaaggttgaaa 216948  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 204988 - 205123
Alignment:
Q  14 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 113  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||      
T  204988 gaaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacac 205087  T
Q  114 agtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
    | |||||||  ||||  ||||| || ||||||||||    
T  205088 aatgtcctactcctagaaaaagttcaagggttgaaa 205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 198361 - 198274
Alignment:
Q  15 aagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 102  Q
    ||||||||||||||||||||||| |||||| ||||  |||||||||||||||||  ||| |||| |||||||||||||||| ||||||    
T  198361 aagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga 198274  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 226206 - 226108
Alignment:
Q  12 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 110  Q
    ||||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| ||||||| ||||||    
T  226206 atgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaaccaaaca 226108  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 211761 - 211665
Alignment:
Q  14 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 110  Q
    ||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| ||||||| ||||||    
T  211761 gaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaagcaaaca 211665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 216774 - 216723
Alignment:
Q  285 tgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgtt 336  Q
    |||||||||| |||||||||||||||| |||||||||||||| | |||||||    
T  216774 tgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgtt 216723  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 6903505 - 6903370
Alignment:
Q  14 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 113  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||      
T  6903505 gaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacac 6903406  T
Q  114 agtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
    | |||||||  ||||  ||||| |||||||||||||    
T  6903405 aatgtcctactcctagaaaaagttccagggttgaaa 6903370  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 6904866 - 6904803
Alignment:
Q  39 ttatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 102  Q
    |||||| ||||  ||||| |||||||||||  |||||||| |||||||||||||||| ||||||    
T  6904866 ttatatatgatccaacttttgttgagatttcttatccattcaaaactccaagtactaatggaga 6904803  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 29838360 - 29838223
Alignment:
Q  12 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 111  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||| ||  ||||||||||||||| ||||||| |||| ||    
T  29838360 atgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaac 29838261  T
Q  112 caagtgtcctaggcctatgaaaaggtccagggttgaaa 149  Q
     || | ||||||  |||  |||||||||| ||||||||    
T  29838260 aaattatcctagttctagaaaaaggtccaaggttgaaa 29838223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 3808456 - 3808344
Alignment:
Q  12 atgaagggaattc-aaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 110  Q
    ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||| | ||||| ||||||    
T  3808456 atgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaaca 3808357  T
Q  111 ccaagtgtcctag 123  Q
    | |||| ||||||    
T  3808356 caaagtatcctag 3808344  T

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