View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_6 (Length: 387)
Name: NF16118_low_6
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 50909778 - 50910153
Alignment:
| Q |
1 |
caaaagtacacctacgctacgcaaggtcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataatt |
100 |
Q |
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| T |
50909778 |
caaaagtacacctacgctacgcaagctcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataatt |
50909877 |
T |
|
| Q |
101 |
caaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttccaacaagtattaatctatt |
200 |
Q |
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| T |
50909878 |
caaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttccaacaagtattaatctatt |
50909977 |
T |
|
| Q |
201 |
agacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttcccttacgaagttcagggcgaga |
300 |
Q |
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| T |
50909978 |
agacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttcccttacgaagttcagggcgaga |
50910077 |
T |
|
| Q |
301 |
aagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
376 |
Q |
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| T |
50910078 |
aagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
50910153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
180 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
275 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
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| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
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| Q |
276 |
ttc |
278 |
Q |
| |
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||| |
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|
| T |
50901141 |
ttc |
50901143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 43548535 - 43548637
Alignment:
| Q |
38 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
137 |
Q |
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||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
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| T |
43548535 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
43548634 |
T |
|
| Q |
138 |
cta |
140 |
Q |
| |
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||| |
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| T |
43548635 |
cta |
43548637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 29368771 - 29368852
Alignment:
| Q |
38 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaat |
120 |
Q |
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| T |
29368771 |
tgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagtaat |
29368852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
288 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
328 |
Q |
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| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
290 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
328 |
Q |
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| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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