View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_8 (Length: 276)
Name: NF16118_low_8
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 8439152 - 8439292
Alignment:
| Q |
2 |
ctcatagaagacccggacctttggttgcttcatgagctcatgacattgacatggtgtttgattgcaaaccgatgaagtatgatatacgatgcaggatgga |
101 |
Q |
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| T |
8439152 |
ctcatagaagacccggacctttggttgcttcatgagctcatgac------atggtgtttgattgcaaaccgatgaagtatgatatacgatgcaggatgga |
8439245 |
T |
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| Q |
102 |
ataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
148 |
Q |
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| T |
8439246 |
ataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
8439292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 8439407 - 8439521
Alignment:
| Q |
145 |
acaattatgaaattgaattatattttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
244 |
Q |
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| T |
8439407 |
acaattatgaaattgaattatatcttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
8439506 |
T |
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| Q |
245 |
actcggggacatatt |
259 |
Q |
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| T |
8439507 |
actcggggacatatt |
8439521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 52590749 - 52590692
Alignment:
| Q |
176 |
aaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaa |
233 |
Q |
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| T |
52590749 |
aaatggaaaagagttaaaccaaagcacggtttaaaaacatcaatggtgaataaatgaa |
52590692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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