View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_9 (Length: 271)
Name: NF16118_low_9
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 34671557 - 34671809
Alignment:
| Q |
4 |
tttcacctcgttaacttcttcttcttctttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggt |
103 |
Q |
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| T |
34671557 |
tttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggt |
34671656 |
T |
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| Q |
104 |
cctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgccatttgacatataggacaacgtaactgcaccactccaggtggtgcgg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34671657 |
cctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccactccaggtggtgcgg |
34671756 |
T |
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| Q |
204 |
agaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggtttt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671757 |
agaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggtttt |
34671809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 26965355 - 26965607
Alignment:
| Q |
4 |
tttcacctcgttaacttcttcttcttctttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggt |
103 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965355 |
tttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggt |
26965454 |
T |
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| Q |
104 |
cctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgccatttgacatataggacaacgtaactgcaccactccaggtggtgcgg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26965455 |
cctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccactccaggtggtgcgg |
26965554 |
T |
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| Q |
204 |
agaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggtttt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965555 |
agaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggtttt |
26965607 |
T |
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