View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16119_high_1_N (Length: 442)
Name: NF16119_high_1_N
Description: NF16119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16119_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 169 - 422
Target Start/End: Original strand, 27156108 - 27156362
Alignment:
| Q |
169 |
gtataatacttaacaaggaaatggtcttttttgaaatacaaaagttgataaataactccttaattcataagaatgatcgttggtttattagtttagaaca |
268 |
Q |
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| T |
27156108 |
gtataatacttaacaaggaaatggtcttttttgaaatacaaaacgtgataaataactccttaattcataaaaatgatcgttggtttattagtttagaaca |
27156207 |
T |
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| Q |
269 |
caaatgtactgaaacacttcaattagtgaatgtatcgtgaaaacta-tgagagtcgaaaattatggaaatttcttgaaatacctcactaagattatccat |
367 |
Q |
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| T |
27156208 |
caaatgtactgaaacacatcaattagtgaatgtatcgtgaaaactattgagagtcgaaaattatggaaatttcttgaaatacctcactaagattatccat |
27156307 |
T |
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| Q |
368 |
taccatgatactactaaccgacgaccctaaattgtgcttttgtgtatgatgatgt |
422 |
Q |
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| T |
27156308 |
taccatgatactactaaccgacgaccctaaattgtgcttttgtgtatgatgatgt |
27156362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 422
Target Start/End: Complemental strand, 29195710 - 29195511
Alignment:
| Q |
227 |
cttaattcataagaatgatcgttggtttattagtttagaacacaaatgtactgaaacacttcaattagtgaatgtatcgt-gaaaactatgagagtcgaa |
325 |
Q |
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| T |
29195710 |
cttaattcataaaatttatcgttgatttattagtttagaatgcaaatgtactaaaccatttcaattggtaaatgtattgtagaaaacaa-gagaatagaa |
29195612 |
T |
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| Q |
326 |
aattatggaaatttcttgaaatacctcactaagattatccattaccatgatacta--ctaaccgac-gaccctaaattgtgcttttgtgt-atgatgatg |
421 |
Q |
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| T |
29195611 |
aattatggaaatttcttgaaatacctcacaaagattatccacaactatgatactatgctaaccgacagcccctaaattgtacgtttgtgtaatgatgatg |
29195512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 27155969 - 27156026
Alignment:
| Q |
30 |
aatattccccatcatttaaaaaataataacaactaaatgtaatttaccatagcatcgg |
87 |
Q |
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| T |
27155969 |
aatattccccatcatttaaaaaataataacaactaaatgtaatttaccatagcatcgg |
27156026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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