View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16119_high_2 (Length: 349)

Name: NF16119_high_2
Description: NF16119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16119_high_2
NF16119_high_2
[»] chr8 (1 HSPs)
chr8 (1-343)||(10036378-10036720)
[»] scaffold0097 (5 HSPs)
scaffold0097 (62-198)||(10128-10264)
scaffold0097 (46-207)||(1137-1297)
scaffold0097 (15-198)||(1324-1506)
scaffold0097 (128-198)||(10391-10461)
scaffold0097 (232-283)||(10509-10560)
[»] chr2 (6 HSPs)
chr2 (62-198)||(20706054-20706190)
chr2 (85-207)||(42559287-42559409)
chr2 (87-207)||(20856954-20857074)
chr2 (15-207)||(20857107-20857292)
chr2 (128-198)||(20706317-20706387)
chr2 (232-283)||(20706435-20706486)
[»] chr7 (1 HSPs)
chr7 (61-191)||(48483919-48484049)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 10036720 - 10036378
Alignment:
Q  1 cataaatgatcaggaagaacaaaaagagttcaaactggcccaaaatactagattgacctaccttttaccggacaaaggcagcactctctttcaacatcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10036720 cataaatgatcaggaagaacaaaaagagttcaaactggcccaaaatactagattgacctaccttttactggacaaaggcagcactctctttcaacatcag 10036621  T
Q  101 gggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036620 gggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaacc 10036521  T
Q  201 agaaaacctagtaaatttaacgcctagtaaatttgaaacaaaatgtgaatcgtccaaaataattctacaactaaagggtaaagatcaactataattgttt 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036520 agaaaacctagtaaatttaacgcctagtcaatttgaaacaaaatgtgaatcgtccaaaataattctacaactaaagggtaaagatcaactataattgttt 10036421  T
Q  301 aacctgttgcagatgataattttgttatcctcatattcttcga 343  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  10036420 aacctgttgcagatgataattttgttatcctcatagtcttcga 10036378  T

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Target: scaffold0097 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 10264 - 10128
Alignment:
Q  62 cttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagca 161  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | |||||| ||||||||||||| ||||||| ||||||||||||    
T  10264 cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca 10165  T
Q  162 ttcctggtggactgctatttggcatctgcataataaa 198  Q
    ||| |||||||||  |||||| |  ||||||||||||    
T  10164 ttcttggtggactaatatttgactactgcataataaa 10128  T

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Target: scaffold0097; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 1297 - 1137
Alignment:
Q  46 tactagattgacctaccttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacat 145  Q
    |||| ||||||| | |||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||||||||||||| || ||||    
T  1297 tactggattgacgtgccttttactgtacaaaggcaacactctctttcaacatcaggagtttcgcatactctaga-atccaagaagtaaaatcatgaacat 1199  T
Q  146 gctttgcaccatagcattcctggtggactgctatttggcatctgcataataaaccagaaaac 207  Q
    ||| ||||||||||||||| ||| |||||  |||||| |  ||||||||||||| |||||||    
T  1198 gctctgcaccatagcattcttggcggactaatatttgactactgcataataaacaagaaaac 1137  T

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Target: scaffold0097; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 1324 - 1506
Alignment:
Q  15 aagaacaaaaagagttcaaactggcccaaaatactagattgacctaccttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatact 114  Q
    |||||||||||||| | | |||| |||||||||||||||| || | | |||||| ||||||||| | || ||||||||||||| ||  |||||| |||||    
T  1324 aagaacaaaaagagatgagactg-cccaaaatactagatttacgttctttttactggacaaaggaaacaatctctttcaacattagaagtttcgaatact 1422  T
Q  115 ctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaa 198  Q
    ||  | || |||||||||||||| || ||||  ||||||||||||||||| || |||| || |||||| ||| |||||||||||    
T  1423 ctaaaaactcaagaagtaaaatcttgaacatattttgcaccatagcattcttgatggattgttatttgacatatgcataataaa 1506  T

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Target: scaffold0097; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 10391 - 10461
Alignment:
Q  128 aagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaa 198  Q
    |||||||||| || |||||||||||||||||| |||| ||||||| || |||||| ||| |||||||||||    
T  10391 aagtaaaatcttgaacatgctttgcaccatagtattcttggtggattgttatttgacatatgcataataaa 10461  T

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Target: scaffold0097; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 10509 - 10560
Alignment:
Q  232 tttgaaacaaaatgtgaatcgtccaaaataattctacaactaaagggtaaag 283  Q
    ||||||||||||||| ||| ||  ||| ||||||||||||||||||||||||    
T  10509 tttgaaacaaaatgtaaatagttaaaagtaattctacaactaaagggtaaag 10560  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 20706190 - 20706054
Alignment:
Q  62 cttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagca 161  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | |||||| ||||||||||||| ||||||| ||||||||||||    
T  20706190 cttttactggacaaaggcaacactctctttcaacatcaggagtttcgcatactctagaaacccaataagtaaaatcctgaacatgctctgcaccatagca 20706091  T
Q  162 ttcctggtggactgctatttggcatctgcataataaa 198  Q
    ||| |||||||||  |||||| |  ||||||||||||    
T  20706090 ttcttggtggactaatatttgactactgcataataaa 20706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 42559287 - 42559409
Alignment:
Q  85 tctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggc 184  Q
    ||||||||||||||||| |||||  || |||| || ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |    
T  42559287 tctctttcaacatcaggagtttcaaatgctctacaaacctaagaagtaaaatcctgaacatgctttgcaccatagcattcttggtggactgctatttgac 42559386  T
Q  185 atctgcataataaaccagaaaac 207  Q
       |||||||||||| |||||||    
T  42559387 tagtgcataataaacaagaaaac 42559409  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 20857074 - 20856954
Alignment:
Q  87 tctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcat 186  Q
    ||||||||||| | | ||||||||||||||  | |||||||||||||||||| | ||||||| ||||||||||||||| |||||||||  |||||| |      
T  20857074 tctttcaacattaagagtttcgcatactctagaaacccaagaagtaaaatccagaacatgctctgcaccatagcattcttggtggactaatatttgacta 20856975  T
Q  187 ctgcataataaaccagaaaac 207  Q
    ||||||||||||| |||||||    
T  20856974 ctgcataataaacaagaaaac 20856954  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 20857107 - 20857292
Alignment:
Q  15 aagaacaaaaagagttcaaactggcccaaaatactagattgacctaccttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatact 114  Q
    |||||||||||||| | | |||| |||||||||||||||| || | | |||||| ||||||      || ||||||||||||| ||   ||| | |||||    
T  20857107 aagaacaaaaagagatgagactg-cccaaaatactagatttacgttctttttactggacaa------caatctctttcaacattagaaatttggaatact 20857199  T
Q  115 ctgcatacccaagaagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaaccagaaaac 207  Q
    ||  | || |||||||||||||| ||  |||||||||||||||| ||||| ||||||| || |||||| ||| |||||||||||  |||||||    
T  20857200 ctaaaaactcaagaagtaaaatcttgaccatgctttgcaccataacattcttggtggattgttatttgacatatgcataataaataagaaaac 20857292  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 20706317 - 20706387
Alignment:
Q  128 aagtaaaatcctggacatgctttgcaccatagcattcctggtggactgctatttggcatctgcataataaa 198  Q
    |||||||||| || |||||||||||||||||| |||| ||||||| || |||||| ||| |||||||||||    
T  20706317 aagtaaaatcttgaacatgctttgcaccatagtattcttggtggattgttatttgacatatgcataataaa 20706387  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 20706435 - 20706486
Alignment:
Q  232 tttgaaacaaaatgtgaatcgtccaaaataattctacaactaaagggtaaag 283  Q
    ||||||||||||||| ||| ||  ||| ||||||||||||||||||||||||    
T  20706435 tttgaaacaaaatgtaaatagttaaaagtaattctacaactaaagggtaaag 20706486  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 48483919 - 48484049
Alignment:
Q  61 ccttttaccggacaaaggcagcactctctttcaacatcaggggtttcgcatactctgcatacccaagaagtaaaatcctggacatgctttgcaccatagc 160  Q
    |||||||| ||||| ||||||||||||||||||||||| || ||||| || ||||| || ||||| ||||||||||| || |||| ||||||||||||||    
T  48483919 ccttttactggacagaggcagcactctctttcaacatctggagtttcacacactctacaaacccaggaagtaaaatcttgaacattctttgcaccatagc 48484018  T
Q  161 attcctggtggactgctatttggcatctgca 191  Q
    | || ||||| || || | ||||||||||||    
T  48484019 actcttggtgaacagcaacttggcatctgca 48484049  T

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