View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16119_high_4 (Length: 340)
Name: NF16119_high_4
Description: NF16119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16119_high_4 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0320 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 129 - 340
Target Start/End: Original strand, 47893834 - 47894045
Alignment:
| Q |
129 |
cttgatctgaaacaggagctggacccttaatgtgactttttagaggaagaagagggcacccacaagctctgttaactccttcatcgtctacgaaactaga |
228 |
Q |
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| T |
47893834 |
cttgatctgaaacaggagctggacccttaatgtgactttttagaggaagaagagggcacccacaagctctgttaattccttcatcgtctacgaaactaga |
47893933 |
T |
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| Q |
229 |
gtgataaaccttaattcatacataaacaaacaattaatttaattgggaatcaaaattagggtattattaggaataagaatgaaatgaattgacgtaccat |
328 |
Q |
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| T |
47893934 |
gtgataaaccttaattcatacataaacaaacaattaatttaattgggaatcaaaattagggtattattaggaataagaatgaaatgaattgacgtaccat |
47894033 |
T |
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| Q |
329 |
gtttctatgtgg |
340 |
Q |
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|||||||||||| |
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| T |
47894034 |
gtttctatgtgg |
47894045 |
T |
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Target: scaffold0320 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 20033 - 19905
Alignment:
| Q |
129 |
cttgatctgaaacaggagctggacccttaatgtgactttttagaggaagaagagggcacccacaagctctgttaactccttcatcgtctacgaaactaga |
228 |
Q |
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|||||||||||||||| || ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
20033 |
cttgatctgaaacaggtgcatgacccttaatgtggctttttaaaggtagaagagggcatccacaagctctgttaactccttcatcgtccacaaaactaga |
19934 |
T |
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| Q |
229 |
gtgataaaccttaattcatacataaacaa |
257 |
Q |
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| T |
19933 |
gtgataaaccttaattcacacatcaacaa |
19905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 19870 - 19832
Alignment:
| Q |
281 |
aaattagggtattattaggaataagaatgaaatgaattg |
319 |
Q |
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| T |
19870 |
aaattagggtattattatgactaagaatgaaatgaattg |
19832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 50680896 - 50680768
Alignment:
| Q |
129 |
cttgatctgaaacaggagctggacccttaatgtgactttttagaggaagaagagggcacccacaagctctgttaactccttcatcgtctacgaaactaga |
228 |
Q |
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|||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||||||| |
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| T |
50680896 |
cttgatctgaaacaggtgcaagacccttaatgtggctttttaaaggaagaagagggcatccacaagctcagttaactccttcatcgtccacaaaactaga |
50680797 |
T |
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| Q |
229 |
gtgataaaccttaattcatacataaacaa |
257 |
Q |
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|||||||||||||||||| |||| ||||| |
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| T |
50680796 |
gtgataaaccttaattcacacatcaacaa |
50680768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 50680733 - 50680695
Alignment:
| Q |
281 |
aaattagggtattattaggaataagaatgaaatgaattg |
319 |
Q |
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| T |
50680733 |
aaattagggtattattatgactaagaatgaaatgaattg |
50680695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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