View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16119_low_1 (Length: 335)
Name: NF16119_low_1
Description: NF16119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16119_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 37941758 - 37942039
Alignment:
| Q |
18 |
attataaggagggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttctggg |
117 |
Q |
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| T |
37941758 |
attataaggagggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttctggg |
37941857 |
T |
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| Q |
118 |
ataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctcttgaacgtttctttgggt |
217 |
Q |
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| T |
37941858 |
ataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagttgtaggtgcacgccttgatgctcttgaacgtttctttgggt |
37941957 |
T |
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| Q |
218 |
tttgatttccaacctgcatgttgatgttgttattcgtgttgttgcgtgtttgatcattcatggtgtgaaaatttgttgcaagctgaaaagaagc |
311 |
Q |
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| T |
37941958 |
tttgatttccaacctgcatgttga------------tgttgttgcgtgtttgatcattcatggtgtgaaaatttgttgcaagctgaaaagaagc |
37942039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 39636986 - 39637085
Alignment:
| Q |
113 |
ctgggataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctcttgaacgtttctt |
212 |
Q |
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| T |
39636986 |
ctggtataccagtaaattcctgaaccatggctctgaaatttgtagtatctgtagtgagaactgtagtaggtgcacgtcttgaagctcttgatcttttctt |
39637085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 26257727 - 26257812
Alignment:
| Q |
115 |
gggataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctct |
200 |
Q |
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| T |
26257727 |
gggataccggtgaattcttgaaccatggctctaaaattcgaagtgtcggttgttagaactgtcgtaggtgctcttcttgatgctct |
26257812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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