View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_13 (Length: 455)
Name: NF1611_high_13
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 1109165 - 1108727
Alignment:
| Q |
1 |
acaaattaaaaactagtcatgagaatgcaagagtgttaaatctcttgtgggagagcattgttacttattgtggttctatctggttcgagatattaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
1109165 |
acaaattaaaaactagtcatgagaatgcaaga-tgttaaatctcttgtgggagagcattgttacttattgtggttctatctggctcga--tattaatatt |
1109069 |
T |
|
| Q |
101 |
tgtagttacatgcagatgatattgattnnnnnnnn--ctacgaaatatttagaatcataaaggaagctatgcaaattattttcctattttcctttccttc |
198 |
Q |
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||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1109068 |
tgtagttgcatgaagatgatattgattaaaaaaaaaactatgaaatatttagaatcataaaggaaactatgcaaattattttcctattttcctttccttc |
1108969 |
T |
|
| Q |
199 |
tattacttgactctcaagggnnnnnnnn-cactaataattctcacgtaatgcattctctcttgatttctacaatgacattgacatccaacctggtaaggt |
297 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1108968 |
tattacttgactctcaagggaaaaaaaaacactaataattctcacgtaatgcattctctcttgatttctacaatgacattgacagccaacctggtaaggt |
1108869 |
T |
|
| Q |
298 |
ttttcttt-cttgttgaacaatcatttttgttcccaaatgtattaaattgcaaatacactcttaaggtttttgttttgtaattttaagtatcaaaatgtc |
396 |
Q |
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|||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1108868 |
tttttttttcttgttggacaatcatttttgtccccaaatgtattaaattgcaaatacactcttaaggtttttgttttgtaattttaagtatcaaaatgtc |
1108769 |
T |
|
| Q |
397 |
taacaataaacatatttgagaaccaaaatggatagcaaaagg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1108768 |
taacaataaacatatttgagaaccaaaatggatagcaaaagg |
1108727 |
T |
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