View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611_high_16 (Length: 411)

Name: NF1611_high_16
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611_high_16
NF1611_high_16
[»] chr3 (3 HSPs)
chr3 (1-196)||(1138423-1138618)
chr3 (243-363)||(1138665-1138785)
chr3 (11-52)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (11-48)||(3110531-3110568)
chr2 (15-52)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (11-52)||(6025961-6026002)
chr1 (13-48)||(1118941-1118976)
chr1 (11-56)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (17-49)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (14-57)||(32888960-32889003)
chr7 (13-49)||(7245942-7245978)
[»] chr6 (3 HSPs)
chr6 (13-47)||(2730831-2730865)
chr6 (12-49)||(26373115-26373152)
chr6 (308-356)||(18699812-18699860)
[»] chr4 (3 HSPs)
chr4 (14-52)||(207500-207538)
chr4 (11-48)||(47789196-47789233)
chr4 (293-321)||(51034024-51034052)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1138423 - 1138618
Alignment:
Q  1 caatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138423 caatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtgg 1138522  T
Q  101 tcgatattgaaccaccgtcgtgatgtccccatctttcgttcacacattagcttcaaaaaatgccattttcatttctccacattatttgtaacagac 196  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1138523 tcgatattgaaccaccgtcatgatgtccccatctttcattcacagattagcttcaaaaaatgccattttcatttctccacattatttgtgacagac 1138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 243 - 363
Target Start/End: Original strand, 1138665 - 1138785
Alignment:
Q  243 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatccagag 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1138665 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatcaagag 1138764  T
Q  343 atccacaatttcaatcacccc 363  Q
    |||||||||||||||||||||    
T  1138765 atccacaatttcaatcacccc 1138785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  11 gctatagccactatttgacaactctttgtactaaatagcata 52  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  11 gctatagccactatttgacaactctttgtactaaatag 48  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  15 tagccactatttgacaactctttgtactaaatagcata 52  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  11 gctatagccactatttgacaactctttgtactaaatagcata 52  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  13 tatagccactatttgacaactctttgtactaaatag 48  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  11 gctatagccactatttgacaactctttgtactaaatagcataccac 56  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  17 gccactatttgacaactctttgtactaaatagc 49  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  14 atagccactatttgacaactctttgtactaaatagcataccact 57  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  13 tatagccactatttgacaactctttgtactaaatagc 49  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  13 tatagccactatttgacaactctttgtactaaata 47  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  12 ctatagccactatttgacaactctttgtactaaatagc 49  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 18699812 - 18699860
Alignment:
Q  308 tggttctggaagttctgaagtgtttccatccagagatccacaatttcaa 356  Q
    |||||||||||||| ||||||| |||| || ||||||| ||||||||||    
T  18699812 tggttctggaagttatgaagtgcttccttctagagatctacaatttcaa 18699860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  14 atagccactatttgacaactctttgtactaaatagcata 52  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  11 gctatagccactatttgacaactctttgtactaaatag 48  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 51034024 - 51034052
Alignment:
Q  293 tcgaagaagtaaacttggttctggaagtt 321  Q
    |||||||||||||||||||||||||||||    
T  51034024 tcgaagaagtaaacttggttctggaagtt 51034052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University