View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_17 (Length: 411)
Name: NF1611_high_17
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 396
Target Start/End: Complemental strand, 37202300 - 37201912
Alignment:
| Q |
4 |
tatgattggttggaatataagaatcttttaggtacaattggcgtagtaaaaggtactgtgtgtgaatgcaagtgaagtttaatgagttagtaataataca |
103 |
Q |
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| T |
37202300 |
tatgattggttggaatataagaatcttttaggtacaattggcgtagtaaaaggtactgtg----aatgcaagtgaagtttaatgagttagtaataataaa |
37202205 |
T |
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| Q |
104 |
ggcaaaaaattacgtaatcccaagtggatttgaaggaaaaggaagtttaacaaatgatgcatgcaggtgtgtttcagttgttgaagggtaagttggtaaa |
203 |
Q |
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| T |
37202204 |
ggcaaaaaattacgtaatcccaagtggatttgaaggaaaaggaagtttaacaaatgatgcatgcaggtgtgtttcagttgttgaagggtaagttggtaaa |
37202105 |
T |
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| Q |
204 |
atgatgagaaggacgaaattgaagcacacttgctgcagatacacatggcatatgctagaatatccaagttttgatacttgtcacactcagaatatgccaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202104 |
atgatgagaaggacgaaattgaagcacacttgctgcagatacacatggcatatgctagaatatccaagttttgatacttgtcacactcagaatatgccaa |
37202005 |
T |
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| Q |
304 |
attctcatatgattgatattctttagtagtattaacaaattcaacttaatagacataggaatcggcatcttaactcaattgggtgctattgat |
396 |
Q |
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| T |
37202004 |
attctcatatgattgatattccttagtagtattaacaaattcaacttaatagacataggaatcggcatcttaactcaattgggtgttattgat |
37201912 |
T |
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