View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_23 (Length: 320)
Name: NF1611_high_23
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 7667449 - 7667740
Alignment:
| Q |
12 |
aagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcattgatgtgacaacagatggagaaggaaacactaacaatgagg |
111 |
Q |
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| T |
7667449 |
aagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcattgatgtgacaacagatggagaaggaaacactaacaatgagg |
7667548 |
T |
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| Q |
112 |
aagaatattcaatggaacatggtgagattgggaaggcttatgttaacactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacac |
211 |
Q |
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| T |
7667549 |
aagaatattcaatggaacatggtgagattgggaaggcttatgttaacactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacac |
7667648 |
T |
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| Q |
212 |
ttccacaaaagcccttagaaaccatcaaccacgacgataaagacactcacaaatcgcaggaccgagtttaacattagccggtctcaaaagtc |
303 |
Q |
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| T |
7667649 |
ttccacaaaagcccttagaaaccatcaaccacgacgataaagacactcacaaatcgcaggactgagtttaacattagccggtctcaaaagtc |
7667740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 158 - 303
Target Start/End: Original strand, 7087850 - 7087994
Alignment:
| Q |
158 |
cactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgacgataaagacac |
257 |
Q |
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| T |
7087850 |
cactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgatgataaagacac |
7087949 |
T |
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| Q |
258 |
tcacaaatcgcaggaccgagtttaacattagccggtctcaaaagtc |
303 |
Q |
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| T |
7087950 |
tca-taatcgcaggactgagtttaacattagccggtctcagaagtc |
7087994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 7087678 - 7087825
Alignment:
| Q |
12 |
aagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcattgatgtgacaacagatggagaaggaaacactaacaatgagg |
111 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087678 |
aagaaagaagggtcaatccacattcacagggcctacaagactgaatctgaagagagcattgatgtgacaacagatggagaaggaaacactaacaatgagg |
7087777 |
T |
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| Q |
112 |
aagaatattcaatggaacatggtgagattgggaaggcttatgttaaca |
159 |
Q |
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||||| | |||||||||||||||||| ||||||| || |||||||||| |
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| T |
7087778 |
aagaagactcaatggaacatggtgaggttgggaaagcatatgttaaca |
7087825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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