View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_29 (Length: 274)
Name: NF1611_high_29
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3643111 - 3643364
Alignment:
| Q |
1 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgttg |
100 |
Q |
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| T |
3643111 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgtta |
3643210 |
T |
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| Q |
101 |
ttggtttcatgacggtctatgtgtgtatttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcg |
200 |
Q |
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| T |
3643211 |
ttggtttcatgacggcctatgtgtgtatttattttctttgattgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcg |
3643310 |
T |
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| Q |
201 |
caagttactaagcgaacttacaatccatgagggatgtttctagacggctcaact |
254 |
Q |
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| T |
3643311 |
caagttactaagcgaacttacaatccatgagggatgtttctagacggctcaact |
3643364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 44878605 - 44878665
Alignment:
| Q |
128 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
188 |
Q |
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| T |
44878605 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44878665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 44881316 - 44881256
Alignment:
| Q |
128 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
188 |
Q |
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| T |
44881316 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44881256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33987717 - 33987770
Alignment:
| Q |
1 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataata |
54 |
Q |
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|||||| |||| |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
33987717 |
cacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataata |
33987770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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