View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_36 (Length: 249)
Name: NF1611_high_36
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_36 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 42817073 - 42816834
Alignment:
| Q |
10 |
aagaaaataaaattaccgaggctaatgctttcttatattttacagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggt |
109 |
Q |
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| T |
42817073 |
aagaaaataaacttaccgaggctaatgctttcttatattttgcagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggt |
42816974 |
T |
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| Q |
110 |
ttaagtgtcagagttctcaaccctttttctactggtaaatattaactgagcaagcactagtatatacggatttgaatataacttttgaattttgatccat |
209 |
Q |
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| T |
42816973 |
ttaagtgtcagagttctcaaccctttttctactggtaaatattaactgagcaagcactagtatatacggatttgaatataacttttgaattttgatccat |
42816874 |
T |
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| Q |
210 |
attttgtaatgtcttaatacatgttttgctcacatgaagg |
249 |
Q |
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| T |
42816873 |
attttgtaatgtcttaatacatgttttgctcacatgaagg |
42816834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 17493062 - 17493158
Alignment:
| Q |
51 |
acagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagttctcaaccctttttctactggtaa |
147 |
Q |
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| T |
17493062 |
acagattgacccacgtcatcgctatggacacaatttgcacttatattatgatatttggtttgatagccaaagtactcaaccatttttctattggtaa |
17493158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 6005312 - 6005202
Alignment:
| Q |
38 |
tttcttatattttacagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagttctcaacccttttt |
137 |
Q |
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| T |
6005312 |
tttcttgtattttgcagattgatccacgtcatcgatatggacacaatttacacttgtactataatgtttggttccatagccagagctcacaacctttttt |
6005213 |
T |
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| Q |
138 |
ctactggtaaa |
148 |
Q |
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| T |
6005212 |
ctactggtaaa |
6005202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 52368672 - 52368612
Alignment:
| Q |
53 |
agattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaa |
113 |
Q |
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| T |
52368672 |
agattgacccgcgtcatcgatatggacacaatcttcatatgtattatgatatctggtttaa |
52368612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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