View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_high_37 (Length: 249)
Name: NF1611_high_37
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_37 |
 | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31044762 - 31045001
Alignment:
| Q |
1 |
tcagtttatccaacatttttattgtattatatggcttcagtttagatccttactgcgaaaaagcaacacaatggtgaatcacattgctgagatatgcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31044762 |
tcagtttatccaacatttttattgtattatatggcttcagtttagatccgtactgcgaaaaagcaacacaatggtgaatcacattgctgagatatgcctc |
31044861 |
T |
|
| Q |
101 |
agtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaacattaccaacaatggagaagaagatgaaatctcaacaacatcactgtgaatttag |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| || |
|
|
| T |
31044862 |
agtgaaacgaaacctcagaaaaatcaaaagctcaatcagcacgaacattaccaacaatggagaagcagatgaaatctcagcaagatcactgtgaatgcag |
31044961 |
T |
|
| Q |
201 |
aatgaattgagaaaatactcatgatattacaaaccctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31044962 |
aatgaattgagaaaatactcatgatactacaaaccctatg |
31045001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 18568 - 18332
Alignment:
| Q |
2 |
cagtttatccaacatttttattgtattatatggcttcagtttagatccttactgcgaaaaagcaacacaatggtgaatcacattgctgagatatgcctca |
101 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
18568 |
cagtttatgcaacatttttgttgtattatatggcttcagtttagatccttactgcgaaaaagcaacacaatggtgatacacattgctgagatatacctca |
18469 |
T |
|
| Q |
102 |
gtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaacattacc-aacaatggagaagaagatgaaatctcaacaacatcactgtgaatttag |
200 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||||| ||||| || |
|
|
| T |
18468 |
gtgaaacgaaacctcggaaaaatcaaaagctcaatcagcacgaacatgaccaaacaatggagaagcagatgaaatctcagcaagatcactttgaatgcag |
18369 |
T |
|
| Q |
201 |
aatgaattgagaaaatactcatgatattacaaaccct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18368 |
aatgaattgagaaaatactcatgatattgcaaaccct |
18332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 172655 - 172505
Alignment:
| Q |
2 |
cagtttatccaacatttttattgtattatatggcttcagtttagatccttactgcgaaaaagcaacacaatggtgaatcacattgctgagatatg----- |
96 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
172655 |
cagtttatgcaacatttttattgtattataagccttcagtttagatccttactgcgaaaaagaaatacaatggtgattcacattgctgagatataatata |
172556 |
T |
|
| Q |
97 |
cctcagtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaaca |
147 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
172555 |
cctcagtgaaacgatacctcggaaaaatcaaaagctcaatcggcacgaaca |
172505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 172477 - 172391
Alignment:
| Q |
152 |
caacaatggagaagaagatgaaatctcaacaacatcactgtgaatttagaatgaattgagaaaatactcatgatattacaaacccta |
238 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||| |||||| | ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
172477 |
caacaatggagaagcggatgaaatctcagcaagatcaccgtgaatgcgggatgaattaagaaaatactcatgatattacaaatccta |
172391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University