View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_4 (Length: 673)
Name: NF1611_high_4
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_4 |
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| [»] scaffold0154 (3 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 22743 - 22357
Alignment:
| Q |
7 |
gtgagaagaatcatgaacaattcgtaatggagcaccatttaaatatgttctaggatcttatgaagatggaaagaaaagaatcgactattaccaaactcac |
106 |
Q |
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| T |
22743 |
gtgaaaagaatcatgaacaattcgtaatggagcaccatttaaatatgttctaggatcttatgaagatggaaagaaaagaatcgactattaccaaactcac |
22644 |
T |
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| Q |
107 |
tcacacaaatgaaatcattgtggaattttggcaacgtaagagtgagatcaaagtattctagagtttattcacttgggaaaggcataggtataagattact |
206 |
Q |
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| T |
22643 |
tcacacaa------tcattgtggaattttggcaacgtaagagtgagatcaaagtattctagagtttattcacttgggaaaggcataggtataagattact |
22550 |
T |
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| Q |
207 |
ataacaagatttaaattaagaggggaaaccgcgtttggtatgaattatacaaagcatgagaaaagaaaagatggtgtaggtgcagaaatatcttcattcc |
306 |
Q |
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| T |
22549 |
ataacaagatttaaattaagaggggaaaccgcgtttggtatgaattatacaaagcatgagaaaagaaaagatggtgtaggtgcagaaatatcttcattcc |
22450 |
T |
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| Q |
307 |
attctattagaaaaatatttatattgtcttgtaaatttaatttagttggtataagtattgcatattatatgtagaggttggatttagaatcct |
399 |
Q |
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| T |
22449 |
agtctattagaaaaatatttatactgtcttgtgaatttaatttagttggtatgagtattgcatattatatgtagaggttggatttagaatcct |
22357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 534 - 652
Target Start/End: Complemental strand, 22235 - 22117
Alignment:
| Q |
534 |
aattattaccaatgtctgtatatataccaatgttactgttatgtttgtggtgtgtgtcggtacatgcttgatagattaagacccataaagttttaataac |
633 |
Q |
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| T |
22235 |
aattattaccaatgtctgtatatataccaatgttactgttatgtttgtggtgtgtgtcggtacatgcttgatagattaagacccataaagttttaataac |
22136 |
T |
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| Q |
634 |
cggaataaaaatcccacgt |
652 |
Q |
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| T |
22135 |
cggaataaaaatcccacgt |
22117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 12839 - 12745
Alignment:
| Q |
69 |
aagatggaaagaaaagaatcgactattaccaaactcactcacacaaatgaaatcattgtggaattttggcaacgtaagagtgagatcaaagtattctaga |
168 |
Q |
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| T |
12839 |
aagatggaaagaaaagaatcgaccattaccaaactcactcaaacaaag-----cattgtggaattttggcaacgtaggagtgagatcaaagtattctaga |
12745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 650
Target Start/End: Original strand, 9348 - 9399
Alignment:
| Q |
599 |
gcttgatagattaagacccataaagttttaataaccggaataaaaatcccac |
650 |
Q |
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| T |
9348 |
gcttgatagattaagacccgtaaagttgtaataaccgaaataaaaatcccac |
9399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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