View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_40 (Length: 244)
Name: NF1611_high_40
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 17319412 - 17319623
Alignment:
| Q |
17 |
cagttccctcttttcccttagaatatgctaatttaagtgcgcaaattgaaacccaagcaagattctttgcaagtagatgtggaatttcttctattaagaa |
116 |
Q |
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| T |
17319412 |
cagttccctcttttcccttagaatatgctaatttaagtgcgcaaatagaaacccaagcaagattctttgcaagtagatgtggaatttcttctattaagaa |
17319511 |
T |
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| Q |
117 |
aagggttggcatatgttcttgtgatcacattttggccaggaatgccaatgaatgaaaactttattctttgaataaatgtttggtatttagcacatttctc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17319512 |
aagggttggcatatgttcctgtgatcacattttggccaggggtgccaatgaatgaaaactttattctttgaataaatgtttggtatttagcacatttctc |
17319611 |
T |
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| Q |
217 |
aatcaatttcat |
228 |
Q |
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|||||||||||| |
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| T |
17319612 |
aatcaatttcat |
17319623 |
T |
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