View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_high_41 (Length: 239)
Name: NF1611_high_41
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 36064373 - 36064486
Alignment:
| Q |
1 |
aaaaacgcaaaaaactttgatatatgtcaccatttctaatttaatttgtaaatccaaatacatggaccacactttatatgtatatattctattttttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
36064373 |
aaaaacgcaaaaaactttgatatatgtcaccatttctaat-----ttgtaaatccaaatacatggaccacactttatatgtatatattttatttttcatc |
36064467 |
T |
|
| Q |
101 |
ttttacaactttcacacat |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36064468 |
ttttacaactttcacacat |
36064486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 36064551 - 36064599
Alignment:
| Q |
184 |
tggcacgttctcttgtgtatctatagatttttacttattttgatgatgt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36064551 |
tggcacgttctcttgtgtatctatagatttttacttattttgatgatgt |
36064599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University