View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_high_45 (Length: 231)
Name: NF1611_high_45
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1109158 - 1109252
Alignment:
| Q |
1 |
taatttgtttatagatattgttcgtgcaaaaatatttttctaaataaatcaaatcatgttttatcattatattaatttataaatattttcatagat |
96 |
Q |
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| T |
1109158 |
taatttgtttatagatattgttcgtgcaaaaatatttttctaa-taaatcaaatcatgttttatcattatattaatttataaatattttcgtagat |
1109252 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 1109250 - 1109328
Alignment:
| Q |
146 |
gatggtatacatactaataatttgttatggaactcaattttcaaaaggtaaaatgttttgagaaacttgtcagaataat |
224 |
Q |
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| T |
1109250 |
gatggtatacatacttataatttgttatggaactcaatttttaaaaggtaaaatgttttgagaaacttgtcagaataat |
1109328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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