View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_high_46 (Length: 227)
Name: NF1611_high_46
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_46 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10304897 - 10305123
Alignment:
| Q |
1 |
tcaaacctaggtaaaatggtctgaaaaaatcccggtgatttgatccatcaacttcaatttcatcattgttaagaggtttcaagaccatacatgaatgctc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10304897 |
tcaaacctaggtgaaatggtctgaaaaaatcctggtgatttgatccatcaacttcaatttcatcattgttaagaggtttcaagaccatacatgaatgctc |
10304996 |
T |
|
| Q |
101 |
accagtcacagtattctgtcaagttgagaaaacaatatggtaattgattattaaataacaaatcagtatcattgtccatttttggtaagnnnnnnncgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
10304997 |
accagtcacagtattctgtcaagttgagaaaacaatatggtaattgattattaaataacaaatcagtatcattgtccatttttggtaagaaaaaaactta |
10305096 |
T |
|
| Q |
201 |
actggaatctggccaacgtagaaagga |
227 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
10305097 |
actggaatctggccaatgtagaaagga |
10305123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 38427368 - 38427481
Alignment:
| Q |
36 |
tgatttgatccatcaacttcaatttcatcattgttaagaggtttcaagaccatacatgaatgctcaccagtcacagtattctgtcaagttgagaaaacaa |
135 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||| |||||| ||||||||||| |||||||| |||||| ||| || |||||||||| |
|
|
| T |
38427368 |
tgatttgattcatcaacttcaatttcatcattattcaagggtttcaggaccatgcatgaatgctcgccagtcacgttattctatcaggtcgagaaaacaa |
38427467 |
T |
|
| Q |
136 |
tatggtaattgatt |
149 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
38427468 |
tatattaattgatt |
38427481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University