View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_high_8 (Length: 528)
Name: NF1611_high_8
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_high_8 |
 | |
|
| [»] scaffold1026 (1 HSPs) |
| | |
|
| [»] scaffold0836 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 6 - 513
Target Start/End: Original strand, 26196087 - 26196601
Alignment:
| Q |
6 |
aagagtttgaggagcaaagaaccaagtcatcccatgtttggactatccctaaaatccaagatagtgggatgttccaaaatcaagatcgaaatggctcaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26196087 |
aagagtttgaggagcaaagaaccaagtcatcccatgtttggactctccctaaaatccaagatagtgggatgttccaaaatcaagatcgaaatggctcaaa |
26196186 |
T |
|
| Q |
106 |
aaagatgatgctaacacacaaaaatccatgcttgtgttaattgtagaaagagagcaaatgcaactgtgggacttaaaagacttaaaaagggggagaagtg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
26196187 |
aaagatgatgctaacacacaaaaatccatgcttgtgttaatagtagaaagagagcaaatgcaactgtgggacttaaaaaa---------ggggagaagtg |
26196277 |
T |
|
| Q |
206 |
gttggagggtttggtagaggtgcagaaggagatatttagctattttgcaaatcactttgaaaatgttggttggaagagg----------------tggag |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26196278 |
gttggagggtttggtagaggtgcagaaggagatatttagctattttgcaaatcactttgaaaatgttggttggaagaggcctcatctatacggggtggag |
26196377 |
T |
|
| Q |
290 |
tttctgattctctcttttgcttaaatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26196378 |
tttctgattctctcttttgcttaaatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcg |
26196477 |
T |
|
| Q |
390 |
ggatctgaatgggtttaactttgcttttctcaaatctttttggggtgtcataagagcagaggtcaaagttatgtttgacgaatttcatgttaatgaagaa |
489 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26196478 |
gggtctgaatgggtttaactttgcttttctcaaatctttttggggtgtcataagagcagtggtcaaagttatgtttgacaaatttcatgttaatgaagaa |
26196577 |
T |
|
| Q |
490 |
ctccctaaatatcttctttcctat |
513 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
26196578 |
ctccttaaatatcttctttcctat |
26196601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1026
Description:
Target: scaffold1026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 1492 - 1426
Alignment:
| Q |
446 |
cagaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttctttcctat |
513 |
Q |
| |
|
||||||| || |||||||||||| ||||| ||| ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
1492 |
cagaggtaaaggttatgtttgacaaattttatgctaatgaa-aactccctaaatttcttcttttctat |
1426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 3374 - 3438
Alignment:
| Q |
448 |
gaggtcaaagttatgtttgacgaatttcatgttaatgaagaactccctaaatatcttctttcctat |
513 |
Q |
| |
|
||||| || |||||||||||| ||||| ||| ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
3374 |
gaggtaaaggttatgtttgacaaattttatgctaatgaa-aactccctaaatttcttcttttctat |
3438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University