View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_1 (Length: 975)
Name: NF1611_low_1
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 760; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 25 - 964
Target Start/End: Original strand, 5272853 - 5273779
Alignment:
| Q |
25 |
catatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcattcctttaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272853 |
catatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcattcctttaa |
5272952 |
T |
|
| Q |
125 |
tcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctnnnnnnnnn-ctaattaatcagaattatcat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5272953 |
tcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaattaatcagaattatcat |
5273052 |
T |
|
| Q |
224 |
ataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273053 |
ataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaac |
5273152 |
T |
|
| Q |
324 |
taaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaaatatcaat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5273153 |
taaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaa-------t |
5273245 |
T |
|
| Q |
424 |
caagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273246 |
caagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaa-caattacttactacaatgatgaaactacgatctcttttctttgcc |
5273344 |
T |
|
| Q |
524 |
tcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccag |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273345 |
tcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccag |
5273444 |
T |
|
| Q |
624 |
gtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcctcnn |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273445 |
gtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcctcaa |
5273544 |
T |
|
| Q |
724 |
nnnnnnnnnnngattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnnnnnn |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273545 |
aaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagtta------catcatcatcatca |
5273638 |
T |
|
| Q |
824 |
gattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaag |
923 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273639 |
gattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaag |
5273738 |
T |
|
| Q |
924 |
tagaactgttacaattccatacactttcctcattcatctca |
964 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5273739 |
tagaactgttacaattccacacactttcctcattcatctca |
5273779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
| Q |
311 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
410 |
Q |
| |
|
||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | ||||||| |
|
|
| T |
5268732 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact |
5268831 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
5268832 |
at |
5268833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 5268598 - 5268643
Alignment:
| Q |
38 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
83 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5268598 |
atcaaataattgatagttgaactctatgatgtgatgaaagcaaaat |
5268643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 31152919 - 31152874
Alignment:
| Q |
38 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
83 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
31152919 |
atcaaataattgatagtttaactctgtgatgtgatgaaagcaaaat |
31152874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 836 - 936
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
836 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
935 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| |||| |
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|
| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
|
| Q |
936 |
a |
936 |
Q |
| |
|
| |
|
|
| T |
36151243 |
a |
36151243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 842 - 936
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
842 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
936 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
|
|
| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 34286235 - 34286190
Alignment:
| Q |
38 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
83 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |||||| |
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|
| T |
34286235 |
atcaaataattgatagtttaactctatgatgtgatgaaatcaaaat |
34286190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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