View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_10 (Length: 506)
Name: NF1611_low_10
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 24695012 - 24695461
Alignment:
| Q |
13 |
gagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccnnnnnnnn |
112 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695012 |
gagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccaaaaaaga |
24695111 |
T |
|
| Q |
113 |
nnnnnn-tgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacacaatcccaaagcaaataataccatag |
211 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695112 |
caaaaaatgccctccacctcaattttgaaaccaccca-----------caaatcttagctagataatatccacacaatcccaaagcaaataataccatag |
24695200 |
T |
|
| Q |
212 |
cacaataccacccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagt |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695201 |
cacaataccatccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagt |
24695300 |
T |
|
| Q |
312 |
cacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgtaa |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
24695301 |
cacctgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccactgcacaatgttgtaa |
24695400 |
T |
|
| Q |
412 |
ttattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca |
472 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24695401 |
ttattgatatttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca |
24695461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 202 - 467
Target Start/End: Original strand, 24707724 - 24707990
Alignment:
| Q |
202 |
aataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggt |
300 |
Q |
| |
|
||||||| |||||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
24707724 |
aataccagagcacagtaccacccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggt |
24707823 |
T |
|
| Q |
301 |
atgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgta |
400 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||| |||| |||||||||| ||||||| ||||||| || | |||| |||||||| | || | |
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|
| T |
24707824 |
atgaattaagtcaattatgcacttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgca |
24707923 |
T |
|
| Q |
401 |
caatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctc |
467 |
Q |
| |
|
|||| ||||||| | || ||| ||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
24707924 |
caatattgtaatcgtgaatatttgatttaatccacaaccagttccaagaataaactttcatctcctc |
24707990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
| Q |
55 |
cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
24707522 |
cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc |
24707571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
181 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
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|
| T |
13326066 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13326127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
181 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
|
|
| T |
13338402 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13338463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
166 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||||| |
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|
| T |
32636373 |
gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct |
32636327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
181 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
|
|
| T |
5667939 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
5668000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
166 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| |||||||| |
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|
| T |
51285975 |
gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct |
51285929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
| Q |
120 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
166 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| |||||||||||| |
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|
| T |
48491961 |
gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct |
48492007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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