View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_11 (Length: 477)
Name: NF1611_low_11
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_11 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 222 - 465
Target Start/End: Complemental strand, 7247471 - 7247228
Alignment:
| Q |
222 |
atatatgataaaataggcagtataggtagccaagcagcttacacttgacataatctgatggcactgttttcaaagaatgatgtggagacagcaaaaccaa |
321 |
Q |
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| T |
7247471 |
atatatgataaaataggcagtataggtagctaagcagcttacacttgacataatctgatggcactgttttcaaagaatgatgtggagacagcaaaaccaa |
7247372 |
T |
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| Q |
322 |
aggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagcagcagcaac |
421 |
Q |
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| T |
7247371 |
aggtgcatggactaacatgcatttgcatttaattttttctttgtacattagtttatgaatttgtgtaaaagatgtcagagacaagggcagcagcagcaac |
7247272 |
T |
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| Q |
422 |
aacaaaggcaggtgcagagnnnnnnncagaagcatcacaggttc |
465 |
Q |
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| T |
7247271 |
aacaaaggcaggtgcagagaaaaaaacagaagcatcacaggttc |
7247228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7247699 - 7247524
Alignment:
| Q |
1 |
taaggattttttgacctctaataaacactccaaaatatcttactttaggtttagatcttttggtcgcgctatataaccaattcataagtcgataataaga |
100 |
Q |
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| T |
7247699 |
taaggactttttgacctctaataaacactccaaaatatcttactttaggtttagatcttttgatcgtgctatataaccaattcataagttgataatagga |
7247600 |
T |
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| Q |
101 |
cgtccttattgtttatctgaggttgaactgtctctcaaatgttgaacttcaggaatcaaattcatattcttaatct |
176 |
Q |
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| T |
7247599 |
tgtccttattgtttatgcgaggttggaatgtctctcaaatattaaacttcaggaatcaaatttatattcttaatct |
7247524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 25321379 - 25321474
Alignment:
| Q |
318 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagca |
413 |
Q |
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| T |
25321379 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgtacatttattagtgaatttttgtaaaagatgttagagacaaaggcagca |
25321474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 18505 - 18409
Alignment:
| Q |
318 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgt-aaaagatgtcagagacaagggcagca |
413 |
Q |
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| T |
18505 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgtacatttccttgtgaatttttgtaaaaagatgtcagtgacaaaggcagca |
18409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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