View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_low_12 (Length: 466)
Name: NF1611_low_12
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 46872460 - 46872677
Alignment:
| Q |
17 |
catttcaactaattgcatgtcactcttttcaactttgatacaactttttgatagttagctctaatattttacggagttttgtttcaatatttgagttcag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46872460 |
catttcaactaattgcatgtcactcttttcaactttgatacaactttttgataattagctctaatattttactgagttttgtttcaatatttgagttcag |
46872559 |
T |
|
| Q |
117 |
ttcatctgattgatcaaatataattaaataaagaagactaaaaatttcagatcttaaatcagtcagaaatttcatatcaaatttgcatcaaattgcatgt |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46872560 |
ttcatctgattgatcaacaataattaaataaagaagactaaaaatttcagatcttaaatcagtcagaaatttcatatcaaatttgcatcaaattgcatgt |
46872659 |
T |
|
| Q |
217 |
cactatttggaagttgaa |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46872660 |
cactatttggaagttgaa |
46872677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 290 - 425
Target Start/End: Original strand, 46872729 - 46872864
Alignment:
| Q |
290 |
ttctttgacaacaaccatggcttttccggatgatattccaacctctaagataacaccaccgcagttcgcttcattgaacaacaatgacttcaaaagagaa |
389 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46872729 |
ttctttgacaacaaccatggcttttccagatgatattccaacctctaagataacaccaccgcagttcgcttcattgaacaacgatgacttcaaaagagaa |
46872828 |
T |
|
| Q |
390 |
ggaacttctcattccaatgcattgatatgccctcct |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46872829 |
ggaacttctcattccaatgcattgatatgccctcct |
46872864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 302 - 466
Target Start/End: Original strand, 46890057 - 46890221
Alignment:
| Q |
302 |
aaccatggcttttccggatgatattccaacctctaagataacaccaccgcagttcgcttcattgaacaacaatgacttcaaaagagaaggaacttctcat |
401 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
46890057 |
aaccatggcttttccagatgatattccaacctctaagatgtccccaccgcaattcgcttcattgagcaacaatgacttcaaaagagaaggaacttctcct |
46890156 |
T |
|
| Q |
402 |
tccaatgcattgatatgccctcctccaaggatgacccttcctcaatcaaacagatcagaccacat |
466 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
46890157 |
tccaatgcattgatatgtcctcctccaaggatgaccctgcctcaatcaaacaaatcagaccacat |
46890221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 57 - 234
Target Start/End: Original strand, 46889812 - 46889987
Alignment:
| Q |
57 |
caactttttgatagttagctctaatattttacggagttttgtttcaatatttgagttcagttcatctgattgatcaaatataattaaataaagaagacta |
156 |
Q |
| |
|
|||||||||||| | |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
46889812 |
caactttttgat--tcagctctaaaattttactatgttttgtttcaattttttagttcagttcatctgattgatcaacaataattagatcaagaagacta |
46889909 |
T |
|
| Q |
157 |
aaaatttcagatcttaaatcagtcagaaatttcatatcaaatttgcatcaaattgcatgtcactatttggaagttgaa |
234 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||| |||||| ||||| |
|
|
| T |
46889910 |
aaaaattcagatcttatatctgtcagaaatttcagatcaaatttgcatccaactgcatgtcactacttggaacttgaa |
46889987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 46872869 - 46872929
Alignment:
| Q |
406 |
atgcattgatatgccctcctccaaggatgacccttcctcaatcaaacagatcagaccacat |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46872869 |
atgcattgatatgccctcctccaaggatgacccttcctcaatcaaacagatcagaccacat |
46872929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 46863418 - 46863466
Alignment:
| Q |
292 |
ctttgacaacaaccatggcttttccggatgatattccaacctctaagat |
340 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
46863418 |
ctttgacaacaaccatggtttttcctgacaatattccaacctctaagat |
46863466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University