View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_13 (Length: 460)
Name: NF1611_low_13
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 42816332 - 42816771
Alignment:
| Q |
14 |
catgtcacatgtgtgagaaaaagaatgtagcatacatgaagtactccattgtgtgcaacaattcttccagatgcaatggtaggagcaccagctacaaaac |
113 |
Q |
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| T |
42816332 |
catgtcacatgtgtgagaaaaagaatgtagcatacatgaagtactccattgtgtgcaacaattcttccagatgcaatggtaggagcaccagctacaaaac |
42816431 |
T |
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| Q |
114 |
ttgagtgttgaaatttgcctttttccttctgtccaacatacaaaactctagacgagctaagaacaaaaatccacttagatccgtcggttgtgtgtacaag |
213 |
Q |
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| T |
42816432 |
ttgagtgttgaaatttgcctttttccttctgtccaacatacaaaactctagacgagctaagaacaaaaatccacttagatccgtcggttgtgtgtacaag |
42816531 |
T |
|
| Q |
214 |
gttattgctttgtttgtaaacaagcttgcctccttccacaatcacttcatatgcttccctctctatctgaaaattgcaagcatcaatgttgaagttatta |
313 |
Q |
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| T |
42816532 |
gttattgctttgtttgtaaacaagcttgcctccttccacaatcacttcatatgcttccctctctatctgcaaattgcaagcatcaatgttgaagttgtta |
42816631 |
T |
|
| Q |
314 |
atacaacataaaaatttagtggcaaactttgaaaattataaaatagtttgatagtctgaaatgctcatattaactagagttattgaatgcaatgtgggtg |
413 |
Q |
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| T |
42816632 |
atacaacataaaaatttagtggcaaactttgaaaattataaaatagtttgatagtctgaaatgctcatattaactagagttattgaatgcaatgtgggtg |
42816731 |
T |
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| Q |
414 |
aatgaaaaaatttacaggtccaagatagtttattcgttgc |
453 |
Q |
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| T |
42816732 |
aatgaaaaaatttacaggtccaagatagtttattcgttgc |
42816771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 76 - 282
Target Start/End: Original strand, 6003998 - 6004204
Alignment:
| Q |
76 |
tcttccagatgcaatggtaggagcaccagctacaaaacttgagtgttgaaatttgcctttttccttctgtccaacatacaaaactctagacgagctaaga |
175 |
Q |
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||||||||||||||| |||| | |||| |||| ||||||||||||||||||| |||||| | ||||| |||||||||||||| ||| || ||||||||| |
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| T |
6003998 |
tcttccagatgcaatagtagcaccaccggctaggaaacttgagtgttgaaattggcctttcttcttctctccaacatacaaaattctggatgagctaaga |
6004097 |
T |
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| Q |
176 |
acaaaaatccacttagatccgtcggttgtgtgtacaaggttattgctttgtttgtaaacaagcttgcctccttccacaatcacttcatatgcttccctct |
275 |
Q |
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| T |
6004098 |
acaaaaatccacttagatccttcacaagtgtgtacaaggttcttgctttttctataaacaagccttccttcctctataataacttcatatacttcccttt |
6004197 |
T |
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| Q |
276 |
ctatctg |
282 |
Q |
| |
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|| |||| |
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| T |
6004198 |
ctttctg |
6004204 |
T |
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