View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_low_15 (Length: 453)
Name: NF1611_low_15
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 46082934 - 46083293
Alignment:
| Q |
8 |
gacatcatcagatcacagacctatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46082934 |
gacatcatcagatcacagacctatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaagt |
46083033 |
T |
|
| Q |
108 |
atcagaattactgtacaacttcatttcagccttcaaccaaagnnnnnnnnngggagaaatgtgtcagaaagaaaatcatatgcccacaaaacatgtaata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46083034 |
atcagaattactgtacaacttcatttcagccttcaaccgaagaaaaaaaaagggagaaatgtgtcagaaagaaaatcatatgcccacaaaacatgtaata |
46083133 |
T |
|
| Q |
208 |
cagtacaactagataacaacaactattacctctttttgttcaagtttctcatccaattctttgagctctttatccaacttttcttgaagagatgagtgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46083134 |
cagtacaactagataacaacaactattacctctttttgttcaagtttctcatccaattctttgagctctttatccaacttttcttgaagagatgagtgtt |
46083233 |
T |
|
| Q |
308 |
cttgctccttttcatcatcttctgtatcatctgtaaataaattatagatattcgtgaagg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46083234 |
cttgctccttttcatcatcttctgtatcatctgtaaataaattatagatattcgtgaagg |
46083293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 46083369 - 46083428
Alignment:
| Q |
379 |
gtattaagaatgtccaaatggttgaactttgaagagaagccttgatgtaacggttgaaat |
438 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46083369 |
gtattaagaatgtccaaatgtttgaactttgaagagaagccttgatgtaacggttgaaat |
46083428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 27959306 - 27959229
Alignment:
| Q |
29 |
tatttattacctgcaaaactttcttctcttgttccatctcaaggagtttcttttcataatgatgcctgataactgaag |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
27959306 |
tattgattacctgcaaaaatttcttctcatgttccaactcattaagtttcttttcataatgttgcttgagaactgaag |
27959229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University