View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_16 (Length: 450)
Name: NF1611_low_16
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 35684653 - 35685070
Alignment:
| Q |
19 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaacc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35684653 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgtgcatggacatcaaacc |
35684752 |
T |
|
| Q |
119 |
ttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684753 |
ttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaa |
35684852 |
T |
|
| Q |
219 |
gtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcggg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684853 |
gtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcggg |
35684952 |
T |
|
| Q |
319 |
tttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684953 |
tttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtaga |
35685052 |
T |
|
| Q |
419 |
tccgaaattgttattgtt |
436 |
Q |
| |
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| T |
35685053 |
tccgaaattgttattgtt |
35685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 59 - 360
Target Start/End: Complemental strand, 40672449 - 40672148
Alignment:
| Q |
59 |
ccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaa |
158 |
Q |
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|||||||||||||| ||||| | ||||||||||||||| || | ||||||||| ||| ||||||| ||| |||||||||| | || |||||||| |||| |
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| T |
40672449 |
ccaattataagaacgattcttattcgagaaagaattacagtggtgcatggacaccaagccttttcgacattttgtcatgaaactctcatgcatgcaagaa |
40672350 |
T |
|
| Q |
159 |
tcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcaga |
258 |
Q |
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|||||||||||||||||||||||| |||||||| || | |||||| |||||||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
40672349 |
ccatgggatacaaggttgtgtttacagatcattctctgtacggttttgctgatgctggaagcattcacatgaacaaggtgttgcagtttaccttggcaga |
40672250 |
T |
|
| Q |
259 |
tgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgtt |
358 |
Q |
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||||| ||| || |||||||||||||| ||||| ||||| ||||| || || |||| |||||| | || || || |||||||||||||||||||| ||| |
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| T |
40672249 |
tgtgactcaagccatatgtgtttctcacacaagcaaggaaaacacagtgttacggtcaggtttgccaccagataaagtttttgtaatacctaatgccgtt |
40672150 |
T |
|
| Q |
359 |
ga |
360 |
Q |
| |
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|| |
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|
| T |
40672149 |
ga |
40672148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 20685487 - 20685601
Alignment:
| Q |
19 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaacc |
118 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
20685487 |
ctttaatatgaatacatttccaactttatatggaacactcccaattataagaactattttcactcgagaaagaattaccgttgtgcatggacatcaaacc |
20685586 |
T |
|
| Q |
119 |
ttttcaacactttgt |
133 |
Q |
| |
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||||||||||||||| |
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| T |
20685587 |
ttttcaacactttgt |
20685601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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