View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_low_17 (Length: 434)
Name: NF1611_low_17
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 95 - 414
Target Start/End: Complemental strand, 11805336 - 11805016
Alignment:
| Q |
95 |
caatcaatgttgaaccatcccatcctcaccaactctgacacaa-atctagggggagataaatgcaactcgcaaatgaactagatattttaaagtccctct |
193 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
11805336 |
caatcaatggtgaaccatcccatcctcaccaactctgacacaagatctagggggagataaatgcaactcgcaaatgaactagatatattcaagtccctct |
11805237 |
T |
|
| Q |
194 |
tcaacgatccacttccaaaactagatataataagcaaataaattagatatattcaattattcaaagatggatatacaatattgggtttggatgtgtgcca |
293 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
11805236 |
tcaacgacccacttccaaaactagatataataagcaaataaactagatatatccaattattcaaagatggaaatagaatattgggtttggatgtgtgcca |
11805137 |
T |
|
| Q |
294 |
ttttgttggcaagctatttttgtttgatcaattttatgtggagattgaatgagtggtattataatatgaaactcagnnnnnnncaataccctctacctcc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11805136 |
ttttgttggcaagctatttttgtttgatcaattttatgtggagattgaatgagtggtattataatatgaaactcaaaaaaaaacaataccctctacctcc |
11805037 |
T |
|
| Q |
394 |
tggtcatttgggatggcctct |
414 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11805036 |
tggtcatttgggatggcctct |
11805016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 90 - 316
Target Start/End: Complemental strand, 11819290 - 11819063
Alignment:
| Q |
90 |
aatgccaatcaatgttgaaccatcccatcctcaccaactctgacacaaa-tctagggggagataaatgcaactcgcaaatgaactagatattttaaagtc |
188 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || || | || ||||| |
|
|
| T |
11819290 |
aatgctaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaactaga--------tatatttattgaagtc |
11819199 |
T |
|
| Q |
189 |
cctcttcaacgatccacttccaaaactagatataataagcaaataaattagata--------tattcaattattcaaagatggatatacaatattgggtt |
280 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
11819198 |
cctcttcaacgtcccacttccaagactagatataataagcaaatgaactagatagatagatatattcaattattcaaagatggaaatacaatactgggtt |
11819099 |
T |
|
| Q |
281 |
tggatgtgtgccattttgttggcaagctatttttgt |
316 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |
|
|
| T |
11819098 |
tggatgtgtgccattttatttgcaagctatttttgt |
11819063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 11820595 - 11820495
Alignment:
| Q |
251 |
tattcaaagatggatatacaatattgggtttggatgtgtgccattttgttggcaagctatttttgtttgatcaattttatgtggagattgaatgagtggt |
350 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | | | |||| ||||||| ||||||||||||| |
|
|
| T |
11820595 |
tattcaaagatggatatacaattttgggttcggatgtgtgccattttgttggcaagctatttttgtgttaatatttttgtgtggaggttgaatgagtggt |
11820496 |
T |
|
| Q |
351 |
a |
351 |
Q |
| |
|
| |
|
|
| T |
11820495 |
a |
11820495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University