View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611_low_2 (Length: 926)

Name: NF1611_low_2
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611_low_2
NF1611_low_2
[»] chr6 (16 HSPs)
chr6 (5-478)||(31044292-31044766)
chr6 (451-677)||(31044073-31044294)
chr6 (678-920)||(27552025-27552267)
chr6 (678-919)||(8315421-8315661)
chr6 (678-873)||(17096236-17096431)
chr6 (678-919)||(8319960-8320199)
chr6 (677-920)||(17779913-17780156)
chr6 (678-873)||(17895685-17895881)
chr6 (677-890)||(14531734-14531946)
chr6 (678-916)||(27574657-27574884)
chr6 (678-873)||(17886810-17887000)
chr6 (716-830)||(6440866-6440979)
chr6 (691-780)||(17159610-17159700)
chr6 (691-780)||(17163640-17163730)
chr6 (690-781)||(7888212-7888305)
chr6 (628-674)||(31034621-31034667)
[»] chr8 (21 HSPs)
chr8 (676-926)||(28644560-28644809)
chr8 (678-873)||(33071918-33072113)
chr8 (678-873)||(42234656-42234851)
chr8 (678-926)||(30410239-30410486)
chr8 (678-926)||(30405730-30405960)
chr8 (678-919)||(38757003-38757228)
chr8 (678-830)||(43807486-43807640)
chr8 (678-830)||(43812045-43812199)
chr8 (678-830)||(197685-197841)
chr8 (678-830)||(202203-202359)
chr8 (678-830)||(312522-312678)
chr8 (678-830)||(317040-317196)
chr8 (678-778)||(41949802-41949902)
chr8 (678-774)||(41945339-41945434)
chr8 (706-856)||(27435169-27435314)
chr8 (880-926)||(43807395-43807440)
chr8 (880-926)||(43811954-43811999)
chr8 (895-926)||(197595-197626)
chr8 (895-926)||(202113-202144)
chr8 (895-926)||(312432-312463)
chr8 (895-926)||(316950-316981)
[»] chr4 (20 HSPs)
chr4 (678-926)||(31670090-31670337)
chr4 (677-873)||(10317025-10317221)
chr4 (678-873)||(53722007-53722202)
chr4 (678-873)||(8892582-8892778)
chr4 (675-890)||(27186139-27186356)
chr4 (685-873)||(43683636-43683813)
chr4 (678-830)||(3770842-3770998)
chr4 (678-830)||(44147023-44147179)
chr4 (678-830)||(44151558-44151714)
chr4 (678-873)||(50627904-50628087)
chr4 (678-830)||(41884925-41885075)
chr4 (774-873)||(35842843-35842942)
chr4 (678-830)||(31359151-31359302)
chr4 (678-830)||(49274518-49274668)
chr4 (677-830)||(31354677-31354828)
chr4 (705-755)||(35842797-35842847)
chr4 (712-860)||(53785880-53786028)
chr4 (729-781)||(45976222-45976274)
chr4 (878-926)||(44147223-44147269)
chr4 (878-926)||(44151758-44151804)
[»] chr7 (13 HSPs)
chr7 (678-926)||(22901154-22901403)
chr7 (678-926)||(27761397-27761645)
chr7 (684-916)||(47419498-47419729)
chr7 (678-926)||(27756846-27757094)
chr7 (678-873)||(35705634-35705830)
chr7 (678-873)||(7466485-7466669)
chr7 (678-830)||(7940084-7940240)
chr7 (678-830)||(7944637-7944793)
chr7 (691-869)||(733632-733811)
chr7 (690-828)||(13828109-13828248)
chr7 (690-787)||(37355573-37355670)
chr7 (876-926)||(7939993-7940041)
chr7 (876-926)||(7944546-7944594)
[»] chr3 (14 HSPs)
chr3 (678-926)||(21847109-21847358)
chr3 (678-926)||(21850199-21850448)
chr3 (678-873)||(11004365-11004560)
chr3 (675-890)||(9697583-9697798)
chr3 (678-873)||(9105275-9105470)
chr3 (678-873)||(43547723-43547920)
chr3 (678-830)||(54171925-54172081)
chr3 (678-830)||(54167345-54167501)
chr3 (678-830)||(39399128-39399279)
chr3 (754-873)||(43554645-43554764)
chr3 (678-755)||(43554292-43554371)
chr3 (724-830)||(38175791-38175896)
chr3 (739-859)||(755891-756012)
chr3 (748-781)||(755824-755857)
[»] chr5 (20 HSPs)
chr5 (678-916)||(30695293-30695530)
chr5 (676-873)||(32485947-32486145)
chr5 (678-873)||(19502307-19502504)
chr5 (678-873)||(26336767-26336964)
chr5 (678-873)||(36632314-36632497)
chr5 (678-926)||(40367521-40367757)
chr5 (678-926)||(40371659-40371892)
chr5 (676-830)||(12018729-12018887)
chr5 (698-863)||(43384972-43385138)
chr5 (678-830)||(7099375-7099531)
chr5 (678-830)||(7103944-7104100)
chr5 (678-830)||(12023289-12023445)
chr5 (678-830)||(16794108-16794264)
chr5 (678-830)||(16798669-16798825)
chr5 (726-859)||(20830304-20830437)
chr5 (678-787)||(10277204-10277313)
chr5 (678-830)||(10274546-10274697)
chr5 (678-830)||(37682036-37682181)
chr5 (678-830)||(37658732-37658877)
chr5 (726-800)||(20808675-20808749)
[»] chr1 (6 HSPs)
chr1 (678-920)||(16588394-16588635)
chr1 (678-919)||(39793831-39794070)
chr1 (678-873)||(43591783-43591978)
chr1 (678-926)||(26311522-26311756)
chr1 (678-926)||(26316013-26316247)
chr1 (678-830)||(10504436-10504587)
[»] chr2 (12 HSPs)
chr2 (678-926)||(8055392-8055639)
chr2 (678-926)||(8050839-8051086)
chr2 (677-873)||(12999426-12999623)
chr2 (678-920)||(6463354-6463583)
chr2 (678-830)||(36670503-36670659)
chr2 (678-830)||(36675051-36675207)
chr2 (678-830)||(35950444-35950595)
chr2 (678-840)||(13270980-13271131)
chr2 (678-830)||(41093824-41093975)
chr2 (691-778)||(29767953-29768041)
chr2 (743-830)||(34590280-34590365)
chr2 (735-769)||(27403696-27403730)
[»] scaffold0202 (1 HSPs)
scaffold0202 (30-399)||(18654-19033)
[»] scaffold0440 (2 HSPs)
scaffold0440 (678-830)||(2980-3136)
scaffold0440 (678-830)||(7506-7661)
[»] scaffold0044 (4 HSPs)
scaffold0044 (678-830)||(44866-45022)
scaffold0044 (678-830)||(49446-49602)
scaffold0044 (876-926)||(44775-44823)
scaffold0044 (876-926)||(49355-49403)
[»] scaffold0018 (2 HSPs)
scaffold0018 (226-362)||(172894-173030)
scaffold0018 (32-209)||(172780-172952)
[»] scaffold0006 (1 HSPs)
scaffold0006 (680-780)||(60201-60302)


Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 5 - 478
Target Start/End: Complemental strand, 31044766 - 31044292
Alignment:
Q  5 actgaaatgaaaattggtttgttcatgtagataatgaatggttaaatatctt-cattcttattagttttattgacatttttacttcgatttttaaagata 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  31044766 actgaaatgaaaattggtttgtccatgtagataatgaatggttaaatatctttcattcttattagttttaatgacatttttacttcgatttttaaagata 31044667  T
Q  104 atgaatagttagtnnnnnnnnttcaattagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaaatagataacatctt 203  Q
    |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  31044666 atgaatagttagtaaaaaaaaatcaattagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgt 31044567  T
Q  204 tgaaatgttgcgcccgtgttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttt 303  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31044566 tgaaatgctgcacccgtgttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttt 31044467  T
Q  304 tggtcttgctatggccgtattgaattttggattctgattcagaagcttgccaagcgtttctgtgatctctataagccggtcagacggataggtgaactat 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  31044466 tggtcttgctatggccgtattgaattttggattctgattcagaagcttgccaagtgtttctgtgatctctataagccagtcagacggataggtgaactat 31044367  T
Q  404 tatttgaaaccatatcacggtgacccaaatacaacagccctgcacctgccaaattctacagaagttaattcagcc 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31044366 tatttgaaaccatatcacggtgacccaaatacaacagccctgcacctgccaaattctgcagaagttaattcagcc 31044292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 451 - 677
Target Start/End: Complemental strand, 31044294 - 31044073
Alignment:
Q  451 gccaaattctacagaagttaattcagcctttcaaagttctggattagaaggatatctctaatggatgacccccctcaaatcctcattcaatgggaaggca 550  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31044294 gccaaattctgcagaagttaattcagcctttcgaagttctggattagaaggatatctctaatggatgacccccctcaaatcctcattcaatgggaaggca 31044195  T
Q  551 tttttaggaaattgaaggatctttaaagaagtgctatatatgaaagttggtgattcaccttttcaatatatatggcatgcatggattctaaccactctct 650  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||    
T  31044194 tttttaggaaattgaaggat-tttaaagaagtgctatatatgaaagttggtgattcaccttttcaatatatatg----gcatggattctaaccactatct 31044100  T
Q  651 ccttttctcaaaattgtagataagaag 677  Q
    |||||||||||||||||||||||||||    
T  31044099 ccttttctcaaaattgtagataagaag 31044073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 678 - 920
Target Start/End: Complemental strand, 27552267 - 27552025
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27552267 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgtt 27552168  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt--gc 875  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||  |     
T  27552167 aaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcgt 27552068  T
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataacttt 920  Q
    ||| |||||||||  |||||||| |||||||||||||||||||||    
T  27552067 atggagaatcaat--aagaatcaattacaatttcatcataacttt 27552025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 678 - 919
Target Start/End: Complemental strand, 8315661 - 8315421
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8315661 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgt 8315562  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgca 876  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||   |    
T  8315561 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcata 8315462  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataactt 919  Q
    |||||||||||||||   |||| || || ||||||||||||||    
T  8315461 tgtagaatcaataaa--gatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 678 - 919
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||   ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttcttat 8320000  T
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactt 919  Q
    ||||||||||||||   |||| || || ||||||||||||||    
T  8319999 gtagaatcaataaa--gatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 677 - 920
Target Start/End: Original strand, 17779913 - 17780156
Alignment:
Q  677 gtgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  17779913 gtgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttg 17780012  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt-g 874  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||| |    
T  17780013 ttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcg 17780112  T
Q  875 catgtagaatcaataaaagaatcatttacaatttcatcataacttt 920  Q
     |||||||||||||  |||||||| |||||||||||||||||||||    
T  17780113 tatgtagaatcaat--aagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 17895881 - 17895685
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtatttttt 17895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 677 - 890
Target Start/End: Complemental strand, 14531946 - 14531734
Alignment:
Q  677 gtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||| |||||    
T  14531946 gtgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttg 14531847  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgc 875  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||| |||||||||||||| |    
T  14531846 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt-c 14531748  T
Q  876 atgtagaatcaataa 890  Q
    || ||||||||||||    
T  14531747 at-tagaatcaataa 14531734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 678 - 916
Target Start/End: Complemental strand, 27574884 - 27574657
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||              
T  27574884 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta---------- 27574795  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt--gc 875  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||  |     
T  27574794 -gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttcgt 27574696  T
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataa 916  Q
    ||| | |||||||  |||||||| ||||||||||| |||||    
T  27574695 atggaaaatcaat--aagaatcaattacaatttcaccataa 27574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 17887000 - 17886810
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||       ||||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttgt 17886907  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  17886906 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtatttttt 17886810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 716 - 830
Target Start/End: Complemental strand, 6440979 - 6440866
Alignment:
Q  716 tcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgc 815  Q
    ||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  816 ttgtgcttcaagcaa 830  Q
    |||| ||||||||||    
T  6440880 ttgtacttcaagcaa 6440866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 691 - 780
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  691 taattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 780  Q
    |||||||||||||| |||||||||||||  || ||| | || |||| |||||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 691 - 780
Target Start/End: Original strand, 17163640 - 17163730
Alignment:
Q  691 taattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 780  Q
    |||||||||||||| |||||||| |||   || ||| | || ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  17163640 taattcaagtttagattagtgatgatcgtgattagttgattgatcacactttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 690 - 781
Target Start/End: Complemental strand, 7888305 - 7888212
Alignment:
Q  690 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgttagag 781  Q
    ||||||||||||||  |||||||||||||   | ||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  7888305 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 628 - 674
Target Start/End: Complemental strand, 31034667 - 31034621
Alignment:
Q  628 tgcatggattctaaccactctctccttttctcaaaattgtagataag 674  Q
    ||||||||||||||||||| ||||| |||||  ||||||||||||||    
T  31034667 tgcatggattctaaccactatctccctttcttgaaattgtagataag 31034621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 676 - 926
Target Start/End: Original strand, 28644560 - 28644809
Alignment:
Q  676 agtgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28644560 agtgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttg 28644659  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttg 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  28644660 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttg 28644759  T
Q  875 catgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||  |||||||| ||||||||||||||||| |||||||||    
T  28644760 catgtagaatcaat--aagaatcaattacaatttcatcataattttcttctc 28644809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 678 - 926
Target Start/End: Complemental strand, 30410486 - 30410239
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttgca 876  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| | ||||  |    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||||||||||   |||| |||||||||||||||||||||||||||    
T  30410286 tgtagaatcaataaa--gatcaattacaatttcatcataactttcttctc 30410239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 678 - 926
Target Start/End: Complemental strand, 30405960 - 30405730
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||                 |||||||||||||||||||||||||||||||||||||    
T  30405960 tgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgtt 30405878  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttgca 876  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| | ||||  |    
T  30405877 agaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30405778  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||||||||||   |||| |||||||||||||||||||||||||||    
T  30405777 tgtagaatcaataaa--gatcaattacaatttcatcataactttcttctc 30405730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 678 - 919
Target Start/End: Original strand, 38757003 - 38757228
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||  |||| ||| ||||||||||||||||||||||||||||||||  ||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatattttatat 38757190  T
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactt 919  Q
    | ||    ||||| || |||| ||||| ||||||||||||||    
T  38757191 gcag----aataatagtatcaattacattttcatcataactt 38757228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 43807640 - 43807486
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  43807640 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43807541  T
Q  778 agaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  43807540 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 43807486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 43812199 - 43812045
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  778 agaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 43812045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 197841 - 197685
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 197685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 202359 - 202203
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 202203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 312678 - 312522
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 312522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 317196 - 317040
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 317040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 678 - 778
Target Start/End: Original strand, 41949802 - 41949902
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  41949802 tgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggtt 41949901  T
Q  778 a 778  Q
    |    
T  41949902 a 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 678 - 774
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagttt 774  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 706 - 856
Target Start/End: Complemental strand, 27435314 - 27435169
Alignment:
Q  706 ttagtgataatcacaatcagtggttaatcacact-ttgttttagtttgttatgaagt-ttgttacaagtttgttagaggttagcagataagatctagagt 803  Q
    |||||||||||| || | |||||||||||||| | |||||||||||||||||||  | |||||||||||||      | |||||| || |||  ||| ||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatgagttattgttacaagttt------gattagcacat-agagttagggt 27435222  T
Q  804 ttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagcta 856  Q
    ||||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  27435221 ttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 880 - 926
Target Start/End: Complemental strand, 43807440 - 43807395
Alignment:
Q  880 agaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  43807440 agaatcaaaaaaaga-tcatttacaatttcatcataactttcttctc 43807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 880 - 926
Target Start/End: Complemental strand, 43811999 - 43811954
Alignment:
Q  880 agaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  43811999 agaatcaaaaaaaga-tcatttacaatttcatcataactttcttctc 43811954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 926
Target Start/End: Complemental strand, 197626 - 197595
Alignment:
Q  895 atcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||||||||||||||||||    
T  197626 atcatttacaatttcatcataactttcttctc 197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 926
Target Start/End: Complemental strand, 202144 - 202113
Alignment:
Q  895 atcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||||||||||||||||||    
T  202144 atcatttacaatttcatcataactttcttctc 202113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 926
Target Start/End: Complemental strand, 312463 - 312432
Alignment:
Q  895 atcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||||||||||||||||||    
T  312463 atcatttacaatttcatcataactttcttctc 312432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 926
Target Start/End: Complemental strand, 316981 - 316950
Alignment:
Q  895 atcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||||||||||||||||||    
T  316981 atcatttacaatttcatcataactttcttctc 316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 31670090 - 31670337
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgt 31670189  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgca 876  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  31670190 tagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgaa 31670289  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||    
T  31670290 tgtagaatcaataaa--gatcatttacaatttcatcataactttcttctc 31670337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 677 - 873
Target Start/End: Complemental strand, 10317221 - 10317025
Alignment:
Q  677 gtgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  10317221 gtgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgt 10317122  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  10317121 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 53722007 - 53722202
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53722007 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 53722106  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||    
T  53722107 agaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 8892778 - 8892582
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgt 8892679  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  8892678 tagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 675 - 890
Target Start/End: Original strand, 27186139 - 27186356
Alignment:
Q  675 aagtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgtttt--agttt-gttatgaagtttgttacaa 770  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||  ||||| |||||||||||||||||||    
T  27186139 aagtgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaa 27186238  T
Q  771 gtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatat 870  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  27186239 gtttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatat 27186338  T
Q  871 tttgcatgtagaatcaataa 890  Q
    ||| |||| |||||||||||    
T  27186339 ttt-catg-agaatcaataa 27186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 685 - 873
Target Start/End: Complemental strand, 43683813 - 43683636
Alignment:
Q  685 ttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggtt 784  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||           ||||||    
T  43683813 ttgttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta-----------gaggtt 43683725  T
Q  785 agcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  43683724 agcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 3770842 - 3770998
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 3770998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 44147023 - 44147179
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 44147179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 44151558 - 44151714
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 44151714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 50628087 - 50627904
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||  ||| |||||||||||||            |||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttgt 50628001  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  50628000 tagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 41884925 - 41885075
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||||| ||| ||||||||| | |||||| ||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaa 41885075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 774 - 873
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  774 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 31359151 - 31359302
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || | || |||||| |||||| ||||||||||||| |||    
T  31359151 tgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagtt 31359250  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||    
T  31359251 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaa 31359302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 49274668 - 49274518
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  49274668 tgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 49274570  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||    
T  49274569 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaa 49274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 677 - 830
Target Start/End: Original strand, 31354677 - 31354828
Alignment:
Q  677 gtgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || | || || |||||||||| |||||||||||||  |    
T  31354677 gtgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagttact 31354775  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||| | |||||  ||||| | ||| ||||||||| | |||||| | ||||||||    
T  31354776 tagggattagctcataaggt-tagggtttgttacttagcttgtacgtcaagcaa 31354828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 705 - 755
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  705 tttagtgataatcacaatcagtggttaatcacactttgttttagtttgtta 755  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 712 - 860
Target Start/End: Original strand, 53785880 - 53786028
Alignment:
Q  712 ataatcacaatcagtggttaatcacactt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgtta 809  Q
    ||||||||| |||||||||||||||| ||  |||||| |||||||| ||| ||||||||||||||||||||   ||||  || | |  ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttat-atagttagggtttgtta 53785977  T
Q  810 cattgcttgtgcttcaagcaatttagctagacattgtatataagctacctc 860  Q
    ||| |||||||||||||||||  || ||||   | ||||||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacctc 53786028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 729 - 781
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  729 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagag 781  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 878 - 926
Target Start/End: Original strand, 44147223 - 44147269
Alignment:
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  44147223 gtagaatcaataaag--atcatttacaatttcatcataactttcttctc 44147269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 878 - 926
Target Start/End: Original strand, 44151758 - 44151804
Alignment:
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  44151758 gtagaatcaataaag--atcatttacaatttcatcataactttcttctc 44151804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 22901154 - 22901403
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgc 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgt 22901353  T
Q  876 atgtagaatcaataaaagaatca-tttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||   |||| ||||||| ||||||||||||||||||||    
T  22901354 atgtagaatcaataaa--gatcattttacaaattcatcataactttcttctc 22901403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 27761397 - 27761645
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  27761397 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 27761496  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttgca 876  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||  |    
T  27761497 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27761596  T
Q  877 tgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 926  Q
    |||||||||||||||   ||||||||||| |||||||||||||||||||||    
T  27761597 tgtagaatcaataaa--gatcatttacaattttcatcataactttcttctc 27761645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 684 - 916
Target Start/End: Complemental strand, 47419729 - 47419498
Alignment:
Q  684 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggt 783  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  784 tagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt-gcatgtaga 882  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  883 atcaataaaagaatcatttacaatttcatcataa 916  Q
    |||||||||  ||||| |||||||||||||||||    
T  47419529 atcaataaa--aatcaattacaatttcatcataa 47419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 27756846 - 27757094
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttgca 876  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||  |    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  877 tgtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 926  Q
    |||||||||||||||   ||||||||||| |||||||||||||||||||||    
T  27757046 tgtagaatcaataaa--gatcatttacaattttcatcataactttcttctc 27757094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 35705634 - 35705830
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgtt-atgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  35705634 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgt 35705733  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacc-tcctttgtatatttt 873  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| | |||||||||||||    
T  35705734 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaa-ccagctagacattgtatataagctacctttctttgtatatttt 35705830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 7940240 - 7940084
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 7940084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 7944793 - 7944637
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 7944637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 691 - 869
Target Start/End: Complemental strand, 733811 - 733632
Alignment:
Q  691 taattcaagtttagtttagtgataatcacaatcag-tggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcag 789  Q
    |||||||||||||| |||||||||||||   | |  ||||||||||||  ||   ||||||||||||||| |||||||||| |||||||||||||||||     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  790 ataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata 869  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgtata 733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 690 - 828
Target Start/End: Complemental strand, 13828248 - 13828109
Alignment:
Q  690 ttaattcaagtttagtttagtgataatcacaatcag-tggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagca 788  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||  || |     
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  789 gataagatctagagtttgttacattgcttgtgcttcaagc 828  Q
     |||| |  ||| || ||||||||||||||||||||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagc 13828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 787
Target Start/End: Original strand, 37355573 - 37355670
Alignment:
Q  690 ttaattcaagtttagtttagtgataatcacaatcagtggttaatcacact-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 787  Q
    ||||||||||||||  | ||||||||||||| | |||||||||||| | | ||| ||||||||||||||||  ||||||||||||| |||||| |||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagc 37355670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 926
Target Start/End: Complemental strand, 7940041 - 7939993
Alignment:
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  7940041 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 7939993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 926
Target Start/End: Complemental strand, 7944594 - 7944546
Alignment:
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  7944594 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 7944546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 21847109 - 21847358
Alignment:
Q  678 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21847208  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttg 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||||    
T  21847209 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 21847308  T
Q  875 catgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
     || |||||||||||||   ||||||||||||||||||||||||||||||||    
T  21847309 tatatagaatcaataaa--gatcatttacaatttcatcataactttcttctc 21847358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 21850199 - 21850448
Alignment:
Q  678 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21850298  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttg 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||||    
T  21850299 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 21850398  T
Q  875 catgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
     || |||||||||||||   ||||||||||||||||||||||||||||||||    
T  21850399 tatatagaatcaataaa--gatcatttacaatttcatcataactttcttctc 21850448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 675 - 890
Target Start/End: Original strand, 9697583 - 9697798
Alignment:
Q  675 aagtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgtttt-agtttgttatgaagtttgttacaagt 772  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  9697583 aagtgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagt 9697682  T
Q  773 ttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattt 872  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  9697683 ttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattt 9697782  T
Q  873 tgcatgtagaatcaataa 890  Q
    | |||| |||||||||||    
T  9697783 t-catg-agaatcaataa 9697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 43547723 - 43547920
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgtttt-agtttgttatgaagtttgttacaagtttg 775  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 54172081 - 54171925
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 54171925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 54167501 - 54167345
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  776 ttagaggttagcagataa--gatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||||||||| || ||||  |   |||||||||||||||||||||||||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaa 54167345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 39399279 - 39399128
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaa 39399128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 754 - 873
Target Start/End: Original strand, 43554645 - 43554764
Alignment:
Q  754 tatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataag 853  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || ||||||||| ||||  ||||||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  854 ctacctcctttgtatatttt 873  Q
    ||||||| ||||||||||||    
T  43554745 ctacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 678 - 755
Target Start/End: Original strand, 43554292 - 43554371
Alignment:
Q  678 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcagtggttaatcacactttg-ttttagtttgtta 755  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||| |||||||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 724 - 830
Target Start/End: Complemental strand, 38175896 - 38175791
Alignment:
Q  724 agtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgctt 823  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||||||| ||||||| |||||  ||||||| ||| ||||||||| | |||||| |||    
T  38175896 agtggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtactt 38175798  T
Q  824 caagcaa 830  Q
    |||||||    
T  38175797 caagcaa 38175791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 739 - 859
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  739 tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga-tctagagtttgttacattgcttgtgcttcaagcaatttagct 837  Q
    |||||||||||||||| ||||||||||||||||||||||||||  || |  |||| |   ||| ||||||||||||||||||||||||||| |  || ||    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaact 755990  T
Q  838 agacattgtatataagctacct 859  Q
    |||   ||||||||||||||||    
T  755991 agatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 781
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  748 gtttgttatgaagtttgttacaagtttgttagag 781  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-99; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 678 - 916
Target Start/End: Original strand, 30695293 - 30695530
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt-gca 876  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| | |    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataa 916  Q
    |||||||||||||||   |||| |||||||||||||||||    
T  30695493 tgtagaatcaataaa--gatcaattacaatttcatcataa 30695530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 676 - 873
Target Start/End: Complemental strand, 32486145 - 32485947
Alignment:
Q  676 agtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagttt 774  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  32486145 agtgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagttt 32486046  T
Q  775 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  32486045 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaa-tcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 26336964 - 26336767
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgtttt-agtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||| |||||||| |||||||||||| |||||||||| |||||    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 678 - 873
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 678 - 926
Target Start/End: Complemental strand, 40367757 - 40367521
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||            ||||||||||    
T  40367757 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgtt 40367670  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagc-aatttagctagacattgtatataagctacctcctttgtatatttt-gc 875  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||| || || | |||| |||||||||||||||||||||||||| |||||       
T  40367669 agaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcat 40367570  T
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    |||||||||||||  |||||||| ||||||||||||||||| |||||||||    
T  40367569 atgtagaatcaat--aagaatcaattacaatttcatcataattttcttctc 40367521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 678 - 926
Target Start/End: Complemental strand, 40371892 - 40371659
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt-gca 876  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||              | |||| |||||||||||||||||||||||||| |||||   |    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||  ||||||||  |||||||||||||||| |||||||||    
T  40371706 tgtagaatcaat--aagaatcaactacaatttcatcataattttcttctc 40371659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 676 - 830
Target Start/End: Original strand, 12018729 - 12018887
Alignment:
Q  676 agtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtt 773  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12018729 agtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 12018828  T
Q  774 tgttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  12018829 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 12018887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 698 - 863
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  698 agtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatc 797  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  798 tagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatat-aagctacctcctt 863  Q
    ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 7099531 - 7099375
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 7099375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 7104100 - 7103944
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 7103944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 12023289 - 12023445
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 12023445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 16794108 - 16794264
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 16794264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 16798669 - 16798825
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 16798825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 726 - 859
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  726 tggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttca 825  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  826 agcaatttagctagacattgtatataagctacct 859  Q
    ||||| ||| ||||||||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 678 - 787
Target Start/End: Original strand, 10277204 - 10277313
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10277204 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10277303  T
Q  778 agaggttagc 787  Q
    |||| |||||    
T  10277304 agagattagc 10277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 10274546 - 10274697
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||  | |||||| ||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaa 10274697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 37682036 - 37682181
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcac-actttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||           |||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 37682124  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  37682125 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 37682181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 37658732 - 37658877
Alignment:
Q  678 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcagtggttaatcac-actttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| ||||||||           |||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttg 37658820  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  37658821 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 37658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 726 - 800
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  726 tggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctag 800  Q
    |||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 678 - 920
Target Start/End: Complemental strand, 16588635 - 16588394
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtata-ttttgca 876  Q
    |||||||| || ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||| |    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataacttt 920  Q
    || |||||||||  |||||||| |||||||||||||||||||||    
T  16588435 tggagaatcaat--aagaatcaattacaatttcatcataacttt 16588394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 678 - 919
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||   ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatat 39794030  T
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactt 919  Q
    ||||||||||||||   |||| ||||| ||||||||||||||    
T  39794031 gtagaatcaataaa--gatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 678 - 873
Target Start/End: Complemental strand, 43591978 - 43591783
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||  |||||    
T  43591978 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgtt 43591879  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  43591878 agaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 26311522 - 26311756
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||||||| ||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgtat 26311709  T
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    | ||||||||||||   |||| |||||||||||||||||||||||||||    
T  26311710 gcagaatcaataaa--gatcaattacaatttcatcataactttcttctc 26311756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 26316013 - 26316247
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||            |||||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26316100  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||||||| ||    
T  26316101 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgtat 26316200  T
Q  878 gtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    | ||||||||||||   |||| |||||||||||||||||||||||||||    
T  26316201 gcagaatcaataaa--gatcaattacaatttcatcataactttcttctc 26316247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 10504436 - 10504587
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  10504436 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10504535  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||    
T  10504536 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaa 10504587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 4e-96; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 8055392 - 8055639
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  8055392 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgtt 8055491  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||   ||    
T  8055492 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatat 8055591  T
Q  878 gtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 926  Q
    ||||||||||||||   ||| ||||||| |||||||||||||||||||||    
T  8055592 gtagaatcaataaa--gatcttttacaattttcatcataactttcttctc 8055639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 678 - 926
Target Start/End: Original strand, 8050839 - 8051086
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatattttgcat 877  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||| ||||   ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacatttcatat 8051038  T
Q  878 gtagaatcaataaaagaatcatttacaa-tttcatcataactttcttctc 926  Q
    ||||||||||||||   ||| ||||||| |||||||||||||||||||||    
T  8051039 gtagaatcaataaa--gatcttttacaattttcatcataactttcttctc 8051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 677 - 873
Target Start/End: Complemental strand, 12999623 - 12999426
Alignment:
Q  677 gtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12999623 gtgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttg 12999524  T
Q  776 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt 873  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12999523 ttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 678 - 920
Target Start/End: Complemental strand, 6463583 - 6463354
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctagacattgtatataagctacctcctttgtatatttt-gca 876  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||| | |    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  877 tgtagaatcaataaaagaatcatttacaatttcatcataacttt 920  Q
    |||||||||||||||   |||| |||||||||||||||||||||    
T  6463395 tgtagaatcaataaa--gatcaattacaatttcatcataacttt 6463354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 36670503 - 36670659
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 36670659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 36675051 - 36675207
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 36675207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 35950595 - 35950444
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  35950595 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagtt 35950496  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||   |||| | ||| ||||||||| | |||||| ||||||||||    
T  35950495 agagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaa 35950444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 678 - 840
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  777 tagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaatttagctaga 840  Q
    |||||||||| | |||||||||| |||||||||||||| || |||||||||||| |||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 41093824 - 41093975
Alignment:
Q  678 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 777  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||| | || | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  778 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaa 41093975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 691 - 778
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  691 taattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgtta 778  Q
    ||||||||||||||||||||||||||||  || | | | || ||||||||||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 743 - 830
Target Start/End: Original strand, 34590280 - 34590365
Alignment:
Q  743 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| || |||  ||| |||||||| || |||||||||| ||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaa 34590365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 735 - 769
Target Start/End: Complemental strand, 27403730 - 27403696
Alignment:
Q  735 acactttgttttagtttgttatgaagtttgttaca 769  Q
    |||||||||||||||||||| ||||||||||||||    
T  27403730 acactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 160; Significance: 9e-85; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 18654 - 19033
Alignment:
Q  30 tgtagataatgaatggttaaatatctt-cattcttattagttttattgacatttttacttcgatttttaaagataatgaatagttagtnnnnnnnnttca 128  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||    
T  18654 tgtagataatgaatggttaaatatctttcattctttgtagttttattgacatttttgcttcgatttttaaagataatgaatagttagttaaaaaaattca 18753  T
Q  129 attagacctt----------ttttctttatgaattttggcattttatgaattggagagtcaagaggattaaatagataacatctttgaaatgttgcgccc 218  Q
    ||||||||||          |||| ||||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||| |||||||| |||| ||    
T  18754 attagaccttctttttttttttttttttatgaattttggcattttatgaagt--agagtcaaaaggattaactagataacatcattgaaatgctgcgtcc 18851  T
Q  219 gtgttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggc 318  Q
    || |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||    |    
T  18852 gtattgaattttggcatattatgaataggagagtcaaaaggattaactggataacatcattgaaattgaatttttatttctgtttttgtcttgctgcacc 18951  T
Q  319 cgtattgaattt-tggattctgattcagaagcttgccaagcgtttctgtgatctctataagccggtcagacggataggtgaa 399  Q
     ||||||||||| |||  || |||| ||||| |||||||  |||||| || || |||||||| ||||||| |||||||||||    
T  18952 tgtattgaatttatggcatccgattaagaagtttgccaattgtttctatggtccctataagctggtcagaaggataggtgaa 19033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 2980 - 3136
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 7506 - 7661
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 776  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgt 7605  T
Q  777 tagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    |||||||||||| ||||| |   ||||||||||||||||||||||| |||||||||    
T  7606 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaa 7661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 45022 - 44866
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 44866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 678 - 830
Target Start/End: Complemental strand, 49602 - 49446
Alignment:
Q  678 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 775  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  776 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaa 830  Q
    ||||||||||||| ||||| |   |||||||||||||||||||||||||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaa 49446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 926
Target Start/End: Complemental strand, 44823 - 44775
Alignment:
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  44823 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 44775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 926
Target Start/End: Complemental strand, 49403 - 49355
Alignment:
Q  876 atgtagaatcaataaaagaatcatttacaatttcatcataactttcttctc 926  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  49403 atgtagaatcaataaag--atcatttacaaattcatcataactttcttctc 49355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 172894 - 173030
Alignment:
Q  226 attttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgtattg 325  Q
    ||||||||||||||||  |||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||| |||||| |    ||||||||    
T  172894 attttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaattgaatttgtacttctgtttttgtcttgttgcatccgtattg 172993  T
Q  326 aattttggattctgattcagaagcttgccaagcgttt 362  Q
    ||||||||  || |||| ||||| |||||||||||||    
T  172994 aattttggcatccgattaagaagtttgccaagcgttt 173030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 172780 - 172952
Alignment:
Q  32 tagataatgaatggttaaatat-cttcattcttattagttttattgacatttttacttcgatttttaaagataatgaatagttagtnnnnnnnnttcaat 130  Q
    ||||| ||||||| |||||||| |||||||||| ||| ||||||||||||||||  |||||||||||||||||||| ||| |||          |||| |    
T  172780 tagatcatgaatgattaaatattcttcattctttttaattttattgacatttttgtttcgatttttaaagataatggata-tta----aacaatttcagt 172874  T
Q  131 tagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaaatagataacatctttgaaat 209  Q
    |||||| ||||| |||||| |||||||||| |||||  |||||||||||| |||||||| |||||||| || |||||||    
T  172875 tagacccttttt-tttatggattttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaat 172952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 780
Target Start/End: Complemental strand, 60302 - 60201
Alignment:
Q  680 ttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacactttgtttt-agtttgttatgaagtttgttacaagtttgtta 778  Q
    ||||||||||||||||||||||   ||  |  ||||||||||| |||| ||||||||| ||  |||| |||||||||| || |||||||| |||||||||    
T  60302 ttagtttgttttaattcaagttactttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgtta 60203  T
Q  779 ga 780  Q
    ||    
T  60202 ga 60201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University