View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_20 (Length: 363)
Name: NF1611_low_20
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 111 - 351
Target Start/End: Complemental strand, 10305336 - 10305096
Alignment:
| Q |
111 |
atgattatctttcaaatatatgtttttatctctttattataatactatatgaattcaggcttcactacttgaagaaaacgtaaaacctagaacagatctt |
210 |
Q |
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| T |
10305336 |
atgattatctttcaaatatatgtttctatctctttattataatactatatgaattcaggcttcactacttgaagaaaacgtaaaacctagaacagatctt |
10305237 |
T |
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| Q |
211 |
cctcatctgcttgtaaatttgcgtgaaagacgcccagagaagcttcattacattggtgtctcatttgggctcctgttggacttattttccttttgtagga |
310 |
Q |
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| T |
10305236 |
cctcatctgcttgtaaatttgcgtgaaagacgcccagagaagcttcattacattggtgtctcatttgggctaatgttggacttattttccttttggagga |
10305137 |
T |
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| Q |
311 |
agcttacattttatcctttctactttggctcgattccagtt |
351 |
Q |
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| T |
10305136 |
agcttaaattttctcctttctacattggccagattccagtt |
10305096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 10305525 - 10305425
Alignment:
| Q |
16 |
catacaatgtttcaatgttctatcctatcatgtatttagttcaaatgtgaacactttttaataattgcattcttttagctttttgatagtgtttgatgat |
115 |
Q |
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| T |
10305525 |
catacaatgtttcaatgtcctatcctatcatgtatttagttcaaatgtgaacactttttaataattgcattcttttagctttttgatagtgtttgatgat |
10305426 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
10305425 |
t |
10305425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 38427729 - 38427627
Alignment:
| Q |
158 |
tatgaattcaggcttcactacttgaagaaaacgtaaaacctagaacagatcttcctcatctgcttgtaaatttgcgtgaaagacgcccagagaagcttca |
257 |
Q |
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|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| ||| || |||||||||| ||||| |||||||| || |
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| T |
38427729 |
tatgaattcaggtttcactacttgaagaaaatgtaaaacccagaacagatcttcctcatttgctagtacatctgcgtgaaaggcgcccggagaagctcca |
38427630 |
T |
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| Q |
258 |
tta |
260 |
Q |
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||| |
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| T |
38427629 |
tta |
38427627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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