View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_22 (Length: 350)
Name: NF1611_low_22
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 36886952 - 36887269
Alignment:
| Q |
16 |
atgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaacca |
115 |
Q |
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| T |
36886952 |
atgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaacca |
36887051 |
T |
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| Q |
116 |
aaaatatggaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacag |
215 |
Q |
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| T |
36887052 |
aaaatatggaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacag |
36887151 |
T |
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| Q |
216 |
ctgtttcaaatttcggagattataaagcctgcatagactcccagtgaggactaacccttgaatgtttctgcattttgacatagaacacggataccaatta |
315 |
Q |
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| T |
36887152 |
ctgtttcaaatttcggagattataaagcctgcatagactcccagtgaggtctaacccttgaatgtttctgcattttgacatagaacacggataccaatta |
36887251 |
T |
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| Q |
316 |
tcaatatcattctgatct |
333 |
Q |
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| T |
36887252 |
tcaatatcattctgatct |
36887269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 22557140 - 22557219
Alignment:
| Q |
23 |
gaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatc |
102 |
Q |
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||||||| | |||||||||||||| ||||||||||||| ||| | || ||||| |||| |||| | || ||||||||||| |
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| T |
22557140 |
gaacagtaggcttacatatgtgtggcattggggggtaatccatatggaatttcacccattatgctgttggaactgacatc |
22557219 |
T |
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