View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_24 (Length: 343)
Name: NF1611_low_24
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 42182479 - 42182174
Alignment:
| Q |
19 |
accaatgcgttatgtttctttctcaaaaaagtcatcaatatttaactatataccatgtgaatagggatggaaccagggnnnnnnnntccaagggagcaaa |
118 |
Q |
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| T |
42182479 |
accaatgcgttatgtttctttctcaaaaaagtcatcaatatttaactatataccatgtgaatagggatggaaccagggaaaaaaa-tccaagggagcaaa |
42182381 |
T |
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| Q |
119 |
atttaatacattttaaagaggagagaatattaagaatcatatatagcatactacattgagttgtagattcatctttgtgataacatacacatctaattat |
218 |
Q |
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| T |
42182380 |
atttaatacattttaaagaggagagaatattaagaatcatatatagcaaactacattgagttgtagattcatctttgtgataaca----catctaattat |
42182285 |
T |
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| Q |
219 |
ttcatgactgattatcaatatttacataaatatgttctgttttaaaatgaatgagtaaaagtgtccaagattcaaacttcaatctctacatatattatag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182284 |
ttcatgactgattatcaatatttacataaatatgttctgttttaaagtgaatgactgaaagtgtccaagattcaaacttcaatctctacatatattatag |
42182185 |
T |
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| Q |
319 |
aatgtcactac |
329 |
Q |
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||||||||||| |
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| T |
42182184 |
aatgtcactac |
42182174 |
T |
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