View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_26 (Length: 318)
Name: NF1611_low_26
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 48932155 - 48932452
Alignment:
| Q |
12 |
gagatgaagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaaca |
111 |
Q |
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| T |
48932155 |
gagatgaagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaaca |
48932254 |
T |
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| Q |
112 |
aaagcattagagataaaactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttaga |
211 |
Q |
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| T |
48932255 |
aaagcattagagataaaactgctgcactgaatagcgtgaaaagccattttttttcagctcccataactgatttcactacgtgggcatatgaaagtttaga |
48932354 |
T |
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| Q |
212 |
ttttgagaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatg |
309 |
Q |
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| T |
48932355 |
ttttgagaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaaactctatgttgatgatg |
48932452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 9392501 - 9392211
Alignment:
| Q |
18 |
aagtatgcaaaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagca |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9392501 |
aagtatgcaaaagccagagggtaatgagaaccatgttgaacaagagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagca |
9392402 |
T |
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| Q |
118 |
ttagagataaaactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttga |
217 |
Q |
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| T |
9392401 |
ttagagataaaactgctacactgaatagcgtgaaaagcca-tttttttcagctcccataactaatttcactatgtgggcatatgaaatcaacgattttga |
9392303 |
T |
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| Q |
218 |
gaagtgggtttggttaaagtttggattttgaaactaattgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatgt |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9392302 |
gaagtggg-ttggttaaagtttggattttgaaactatttgtgttaatgggtcattgaagatcttggatttttgaaactctatgttgatgatgt |
9392211 |
T |
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