View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_27 (Length: 314)
Name: NF1611_low_27
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 6816363 - 6816176
Alignment:
| Q |
1 |
tctgtgcaggacattactttattgttgaacctcagctgagatttgcattttatccaatatatgctgcaacatgtttgcctgagtccttttttgccttggt |
100 |
Q |
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| T |
6816363 |
tctgtgcaggacattactttattgttgaaccccagctgagatttgcattttatccaatatatgctgcaacatgtttgcctgtgtccttttttgccttggt |
6816264 |
T |
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| Q |
101 |
tcaacttcctctgtactttgatctgagtttggctatgtgtcggaaggttcctcagcgcagctacaaagtgttctttcatgaatagtaa |
188 |
Q |
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| T |
6816263 |
tcaacttcctctgtactttgatctgagtttggctatgtgtcggaaggttcctcagcgcagctacaaagtgttctttcatgaatagtaa |
6816176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 6830791 - 6830614
Alignment:
| Q |
1 |
tctgtgcaggacattactttattgttgaacctcagctgagatttgcattttatccaatatatgctgcaacatgtttgcctgagtccttttttgccttggt |
100 |
Q |
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| T |
6830791 |
tctgtgcaggacatttctttattgtcgaagcccagatgagatttgcagtttatcccatatatgccgcaacatgtctgcctgtatccttttttgccttggt |
6830692 |
T |
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| Q |
101 |
tcaacttcctctgtactttgatctgagtttggctatgtgtcggaaggttcctcagcgcagctacaaagtgttctttca |
178 |
Q |
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| T |
6830691 |
ccaactccctctgtactttgatctgagtttggctatgtgtcggaaggttcctcagcgcagctacaaagtgttctttca |
6830614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 6808402 - 6808225
Alignment:
| Q |
1 |
tctgtgcaggacattactttattgttgaacctcagctgagatttgcattttatccaatatatgctgcaacatgtttgcctgagtccttttttgccttggt |
100 |
Q |
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|||||||||| |||| ||| |||||||||| ||||||||| |||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
6808402 |
tctgtgcagggcatttcttcattgttgaacaccagctgagaactgcagtttatcccatatatgctttaacatgtttgcctgtgtccttttttgccttggt |
6808303 |
T |
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| Q |
101 |
tcaacttcctctgtactttgatctgagtttggctatgtgtcggaaggttcctcagcgcagctacaaagtgttctttca |
178 |
Q |
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| T |
6808302 |
ccaactccctctgtactttgatctgagttcggctatgtttcggaaggttcctcagcgcagctacaaagtgttctttca |
6808225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 6815968 - 6815869
Alignment:
| Q |
191 |
agtgcactcttaaactattcaagattattggtatttctaatacaaaatcatgtttgttcagtttcatgtacttaggcttctcatgattgttatgttatgt |
290 |
Q |
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| T |
6815968 |
agtgcactcttaaactattcaagattattggtatttctaatacaaaatcatgtttgttcagtttcatgtacttaggcttctcatgattgttatgttatgt |
6815869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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