View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_28 (Length: 313)
Name: NF1611_low_28
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 36579858 - 36580159
Alignment:
| Q |
1 |
aataattgagctattcttaacacatgaattcagtacttaacttttagaagtacatacatactatgatactacctcaagaaaaatagtacatacatacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36579858 |
aataattgagctattcttaacacatgaattcagtacttaacttttagaagtacatacatactatgatactacctcaagaaaaatagtacatacatacata |
36579957 |
T |
|
| Q |
101 |
gtaacatacagacaagggagatgctgcctagagattgtcagttgttggatatgatttgattaga-----catagtcgcccacgtttaactctcttaggaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
36579958 |
gtaacatacagacaagggagatgctgcctagagattgtcagttgttggatatgatttgattagattagacatggacgcccacgtttaactctcttaggaa |
36580057 |
T |
|
| Q |
196 |
cacatggctgttacaagaccaattnnnnnnngaatccaatttatatatgtcttcattgcatggggcattgtagcctcctaaatttctcttttacatattc |
295 |
Q |
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|
||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36580058 |
cacgtggctgtttcaagaccaattaaaaaaagaatccaatttatatatgtcttcattgcatggggcattgtagcctcctaaatttctcttttacatattc |
36580157 |
T |
|
| Q |
296 |
at |
297 |
Q |
| |
|
|| |
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|
| T |
36580158 |
at |
36580159 |
T |
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