View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611_low_29 (Length: 302)

Name: NF1611_low_29
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611_low_29
NF1611_low_29
[»] chr1 (1 HSPs)
chr1 (7-302)||(6257555-6257845)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 6257845 - 6257555
Alignment:
Q  7 aatatataatttagtttttgtggagggaagggcaatgaactgactacgacaatggaaatgaagaagatatttctcaagagataacaaggacacaaaagca 106  Q
    ||||||||||||||||||||||||| |     | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6257845 aatatataatttagtttttgtggagtg-----ccatgaactgactacgacaatggaaatgaaaaagatatttctcaagagataacaaggacacaaaagca 6257751  T
Q  107 gcctttgaaatgaaatttcccccgataaattctcatattcctattacgnnnnnnnctttctttcaaatcttgttaagtttttatattgggtctaattcat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||| ||    
T  6257750 gcctttgaaatgaaatttcccccgataaattctcatattcctattacgtttttttctttctttcaaatcttgttaggtttttatattgggtctaatttat 6257651  T
Q  207 cattgtaaaatcaatttttaagataatgagtgacattttatacaaattctatttattattataaaattgattcgtaatatgagaaaaattattatt 302  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6257650 cattgtaaaatcaatttctaagataatgagtgacattttatacaaattctatttattattataaaattgattcgtaatatgagaaatattattatt 6257555  T

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