View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_30 (Length: 299)
Name: NF1611_low_30
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11028023 - 11027740
Alignment:
| Q |
1 |
ttgtaaattaaaaatccaataaatgatgctccaagaacaaatataactgcgtcaagaaaaattaacaatgacgaacaaacctatttttgaaggaaataat |
100 |
Q |
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| T |
11028023 |
ttgtaaattaaaaatccaataaatgatgcaccaagaacgaatataactgcgtcaagaaaaattaacaatgacgaacaaacct-tttttgaaggaaataat |
11027925 |
T |
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| Q |
101 |
gaacaaacctagctataaagaaatggaaatgagagaaaggaannnnnnnnnnnnctcaggaaaatgaaattattataaacttgattatttattatttttt |
200 |
Q |
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| T |
11027924 |
gaacaaacctagctattaagaaatggaaatgagagaaaggaa-attatttttttctcaggaaaatgaaattattataaacttgattatttattatttttt |
11027826 |
T |
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| Q |
201 |
gtttagaatataacgaagtgaaaattaaaaaatatgatgctatatatttctaatcaatatactccacttcatgaaagacttgatct |
286 |
Q |
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| T |
11027825 |
gtttagaacataacgaagtgaaaattgaaaaatatgatgcgatatatttctaatcaatatattccacttaatgaatgacttgatct |
11027740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 10984344 - 10984444
Alignment:
| Q |
160 |
gaaaatgaaattattataaacttgattatttattattttttgtttagaatataacgaagtgaaaattaaaaaatatgatgctatatatttctaatcaata |
259 |
Q |
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||||||||| |||| |||||||| |||||||| ||| | | ||| ||| ||| ||||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
10984344 |
gaaaatgaagttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaatatgatgctatatatttc-aatcaata |
10984442 |
T |
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| Q |
260 |
ta |
261 |
Q |
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|| |
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| T |
10984443 |
ta |
10984444 |
T |
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