View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_31 (Length: 296)
Name: NF1611_low_31
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_31 |
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| [»] scaffold0576 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 15328321 - 15328488
Alignment:
| Q |
18 |
atttgagggttgtccctttcttgagcaaagacaatattagtttcattaaaacttggtggtatgtgactg-tattgagctagtgttaagcctcacttgaca |
116 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |
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| T |
15328321 |
atttcaggtttgtccctttcttgagcaaagacaatattagtttcattaaaacttggtggtaagtgactggtattgagctagtgttaagcctcatttgaca |
15328420 |
T |
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| Q |
117 |
ataatagtttcactctcaactctcactctcacctcctcaaacaaaaaatgtttatccttatttcagta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15328421 |
ataatagtttcactctcaactctcactctcacctcctcaaacaaaaaatgtttatccttatttcagta |
15328488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 15364308 - 15364439
Alignment:
| Q |
18 |
atttgagggttgtccctttcttgagcaaagacaatattagtttcattaaaacttggtggtatgtgactg-tattgagctagtgttaagcctcacttgaca |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |
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| T |
15364308 |
atttcagggttgtccctttcttgagcaaagacaatatttgtttcattaaaacttggtggtaagtgactggtattgagctagtgttaagcctcatttgaca |
15364407 |
T |
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| Q |
117 |
ataatagtttcactctcaactctcactctcac |
148 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
15364408 |
ataatagtttcactctcaactctcactctcac |
15364439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 15328673 - 15328734
Alignment:
| Q |
176 |
atttcagtatcaataaccaacaatgcttagttgttctattttgttgattctttgaaataagt |
237 |
Q |
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| T |
15328673 |
atttcagtatcaataaccaacaatgcttagttgttctattttgttgattctttgaaataagt |
15328734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 15364843 - 15364904
Alignment:
| Q |
176 |
atttcagtatcaataaccaacaatgcttagttgttctattttgttgattctttgaaataagt |
237 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15364843 |
atttcagtatcaataatcaacaatgctttgttgttctattttgttgattctttgaaataagt |
15364904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 15364618 - 15364657
Alignment:
| Q |
145 |
tcacctcctcaaacaaaaaatgtttatccttatttcagta |
184 |
Q |
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| T |
15364618 |
tcacctcctcaaacaaaaaatgtttatccttatttcagta |
15364657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 9079 - 9210
Alignment:
| Q |
18 |
atttgagggttgtccctttcttgagcaaagacaatattagtttcattaaaacttggtggtatgtgactg-tattgagctagtgttaagcctcacttgaca |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |
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| T |
9079 |
atttcagggttgtccctttcttgagcaaagacaatatttgtttcattaaaacttggtggtaagtgactggtattgagctagtgttaagcctcatttgaca |
9178 |
T |
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| Q |
117 |
ataatagtttcactctcaactctcactctcac |
148 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9179 |
ataatagtttcactctcaactctcactctcac |
9210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 9614 - 9675
Alignment:
| Q |
176 |
atttcagtatcaataaccaacaatgcttagttgttctattttgttgattctttgaaataagt |
237 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9614 |
atttcagtatcaataatcaacaatgctttgttgttctattttgttgattctttgaaataagt |
9675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 9389 - 9428
Alignment:
| Q |
145 |
tcacctcctcaaacaaaaaatgtttatccttatttcagta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
9389 |
tcacctcctcaaacaaaaaatgtttatccttatttcagta |
9428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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