View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_35 (Length: 274)
Name: NF1611_low_35
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 25836738 - 25836466
Alignment:
| Q |
2 |
ggtcatgttccttggaagttaagaaacatgtggatgaggtagattattcgttggtcaa-gtatcc----------accttgttaagcttgtcacctttgt |
90 |
Q |
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| T |
25836738 |
ggtcatgttccttggaagttaagaaacaggcggatgaggtagattattctttggtcaaagtatccggcttaatggacattgttaagcttttcacctttgt |
25836639 |
T |
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| Q |
91 |
gttggacattattactcttgctttcaagaatcatggtcttgttccctttgaagttaaaaacaggcagctgagttgtgttgagttacctaagaatatgcgt |
190 |
Q |
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| T |
25836638 |
gttggacattattactattgctttcaagaat-atggtcttgttcc-tttgaagttaaaaacaggcagttgagttgtgttgagttacctaagaatatgcgt |
25836541 |
T |
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| Q |
191 |
ttcactattttgcacatcttcagagaaggaaattgttgtgcagacaagattgcttccatttggtcctagaattat |
265 |
Q |
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| T |
25836540 |
ttcactattttgcacatcttcagagaaggaaatcgttgtgcagacaagattgcttccctttggtcctagaattat |
25836466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 25836870 - 25836708
Alignment:
| Q |
3 |
gtcatgttccttggaagttaagaaacatgtggatgaggtagattattcgttggtcaagtatcc----------accttgttaagcttgtcacctttgtgt |
92 |
Q |
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| T |
25836870 |
gtcatgttccttggaagttaagaaacaggaggatgaggtagattattctttggtcaagtatccggcttaatggacattgttaaacttttcacctttgtgt |
25836771 |
T |
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| Q |
93 |
tggacattattactcttgctttcaagaatcatggtcttgttccctttgaagttaa-aaacaggc |
155 |
Q |
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| T |
25836770 |
tggacattattactcttgctttcaagaatcatggtcatgtt-ccttggaagttaagaaacaggc |
25836708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 25836928 - 25836861
Alignment:
| Q |
69 |
ttgttaagcttgtcacctttgtg-ttggacattattactcttgctttcaagaatcatggtcttgttcc |
135 |
Q |
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| T |
25836928 |
ttgttaagcttgtgacctttgtgattggacattattactcttgctttcaagaatcattgtcatgttcc |
25836861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 8859844 - 8859919
Alignment:
| Q |
170 |
gagttacctaagaatatgcgtttcactattttgcacatcttcagagaaggaaattgttgtgcagacaagattgctt |
245 |
Q |
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| T |
8859844 |
gagttaactaagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgctt |
8859919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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