View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611_low_36 (Length: 251)

Name: NF1611_low_36
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611_low_36
NF1611_low_36
[»] scaffold0576 (2 HSPs)
scaffold0576 (32-251)||(9666-9885)
scaffold0576 (9-44)||(9881-9916)
[»] chr6 (4 HSPs)
chr6 (32-251)||(15364895-15365114)
chr6 (32-251)||(15328725-15328944)
chr6 (123-177)||(8810665-8810719)
chr6 (9-44)||(15365110-15365145)
[»] chr7 (3 HSPs)
chr7 (106-172)||(32862068-32862135)
chr7 (126-177)||(32315251-32315303)
chr7 (123-172)||(45088901-45088950)
[»] chr4 (4 HSPs)
chr4 (120-178)||(30850364-30850423)
chr4 (106-168)||(33495573-33495636)
chr4 (106-177)||(34969374-34969446)
chr4 (106-177)||(46409462-46409534)
[»] chr2 (4 HSPs)
chr2 (106-172)||(20990890-20990957)
chr2 (123-177)||(38904086-38904141)
chr2 (129-177)||(9581268-9581316)
chr2 (128-179)||(10195641-10195693)
[»] chr8 (2 HSPs)
chr8 (123-177)||(11771732-11771786)
chr8 (111-179)||(13286144-13286212)
[»] chr5 (4 HSPs)
chr5 (128-172)||(37021358-37021403)
chr5 (106-177)||(13864352-13864424)
chr5 (129-172)||(36047248-36047292)
chr5 (106-170)||(41650928-41650992)
[»] chr3 (2 HSPs)
chr3 (123-172)||(8174295-8174344)
chr3 (106-177)||(54018387-54018459)
[»] chr1 (3 HSPs)
chr1 (106-178)||(1091187-1091260)
chr1 (123-172)||(6219849-6219898)
chr1 (106-142)||(29506835-29506871)
[»] scaffold0896 (1 HSPs)
scaffold0896 (123-167)||(3166-3210)


Alignment Details
Target: scaffold0576 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 9885 - 9666
Alignment:
Q  32 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtatatgcaatacata 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  ||||| ||||    
T  9885 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaattcgtcctcgaactcagttagtatgggcaatgcata 9786  T
Q  132 atatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaatgctttagaatccatatattttaccaatgatgaagcaagatgattgtacaaagg 231  Q
    |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9785 atatatgcaagttttgggttcaaaccccgaccaccacaaaacaaaatgctttagaatccatatattttaccaaagatgaagcaagatgattgtacaaagg 9686  T
Q  232 atacaacgacacttatttca 251  Q
    ||||||||||||||||||||    
T  9685 atacaacgacacttatttca 9666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 9916 - 9881
Alignment:
Q  9 cgaagaatattttatagttgttgtatttatttattt 44  Q
    |||| |||||||||||||||||||||||||||||||    
T  9916 cgaaaaatattttatagttgttgtatttatttattt 9881  T

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Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 15365114 - 15364895
Alignment:
Q  32 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtatatgcaatacata 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  ||||| ||||    
T  15365114 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaattcgtcctcgaactcagttagtatgggcaatgcata 15365015  T
Q  132 atatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaatgctttagaatccatatattttaccaatgatgaagcaagatgattgtacaaagg 231  Q
    |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15365014 atatatgcaagttttgggttcaaaccccgaccaccacaaaacaaaatgctttagaatccatatattttaccaaagatgaagcaagatgattgtacaaagg 15364915  T
Q  232 atacaacgacacttatttca 251  Q
    ||||||||||||||||||||    
T  15364914 atacaacgacacttatttca 15364895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 15328944 - 15328725
Alignment:
Q  32 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtatatgcaatacata 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||    
T  15328944 tatttatttatttgcattgttttgcgtagagttgcaatatatagtactaacaaatgctttagaattcgtcctcgaacttagttggtatgggcaatgcata 15328845  T
Q  132 atatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaatgctttagaatccatatattttaccaatgatgaagcaagatgattgtacaaagg 231  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  15328844 atatatgcaagttcagggttcaaaccccagccaccacaaaacaaaatgctttagaattcatatattttaccgaagatgaagcaagatgattgtacaaagg 15328745  T
Q  232 atacaacgacacttatttca 251  Q
    ||| ||||||||||||||||    
T  15328744 atataacgacacttatttca 15328725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 8810665 - 8810719
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||||||||||||||||||| || ||||||||||||  |||||||||||| ||||    
T  8810665 caatacataatatatgcaaggtctgagttcaaacccgaaccaccacaaaaaaaaa 8810719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 15365145 - 15365110
Alignment:
Q  9 cgaagaatattttatagttgttgtatttatttattt 44  Q
    |||| |||||||||||||||||||||||||||||||    
T  15365145 cgaaaaatattttatagttgttgtatttatttattt 15365110  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 32862135 - 32862068
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaagttc-agagttcaaaccctgaccaccacaaaa 172  Q
    |||||||||||||||  |||||||||||||||||||| ||  | |||||||||||||| |||||||||    
T  32862135 aacttagttggtatagacaatacataatatatgcaagatctggcgttcaaaccctgactaccacaaaa 32862068  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 32315251 - 32315303
Alignment:
Q  126 tacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||    
T  32315251 tacataatatatgcaaggttcagggttcgaaccctgaccaccacaaaaaaaaa 32315303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 45088901 - 45088950
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaa 172  Q
    |||| ||||||||||||||| || | |||||||||| |||||||||||||    
T  45088901 caatgcataatatatgcaaggtcggggttcaaaccccgaccaccacaaaa 45088950  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 30850423 - 30850364
Alignment:
Q  120 atgcaatacataatatatgcaa-gttcagagttcaaaccctgaccaccacaaaacaaaat 178  Q
    ||||||| |||||||||||||| |||||| |||||||||| |||| |||||||| |||||    
T  30850423 atgcaatgcataatatatgcaaggttcagggttcaaaccccgacctccacaaaaaaaaat 30850364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 33495573 - 33495636
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag-ttcagagttcaaaccctgaccaccac 168  Q
    ||||||||||||||   |||||||||||||||||||| ||||| ||||||||||  ||||||||    
T  33495573 aacttagttggtatgaacaatacataatatatgcaagattcagggttcaaaccccaaccaccac 33495636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 34969446 - 34969374
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||||||||| |||   ||||| |||||||||||||| ||||| |||||||| | ||||||||||||| ||||    
T  34969446 aacttagttgatatgaacaatatataatatatgcaaggttcagggttcaaactccgaccaccacaaaaaaaaa 34969374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 46409534 - 46409462
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaa-gttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||| |||||||| |  |||| |||||||||||||| |||||| |||| | |||||| |||||||||||||||    
T  46409534 aactcagttggtaaagacaatgcataatatatgcaaagttcagggttcgatccctgaacaccacaaaacaaaa 46409462  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 20990957 - 20990890
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaa 172  Q
    |||||||||| ||||  |||| ||||| ||||||||| ||||| |||||||||| |||||||||||||    
T  20990957 aacttagttgttatagacaatgcataaaatatgcaaggttcagggttcaaaccccgaccaccacaaaa 20990890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 38904086 - 38904141
Alignment:
Q  123 caatacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  38904086 caatgcataatatatgcaaggttcagggttcaaaccctaaccaccacaaaaaaaaa 38904141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 9581316 - 9581268
Alignment:
Q  129 ataatatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||||||||||||| || | |||||||||||| ||||||||||| ||||    
T  9581316 ataatatatgcaaggtccgggttcaaaccctggccaccacaaaaaaaaa 9581268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 10195693 - 10195641
Alignment:
Q  128 cataatatatgcaagttcag-agttcaaaccctgaccaccacaaaacaaaatg 179  Q
    ||||||||||||||| || | |||||||||||||| |||||||||| ||||||    
T  10195693 cataatatatgcaagatctggagttcaaaccctgatcaccacaaaaaaaaatg 10195641  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 11771732 - 11771786
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||||||||||||||||||| || |||||| ||||  ||||||||||||| ||||    
T  11771732 caatacataatatatgcaaggtccgagttcgaacctcgaccaccacaaaaaaaaa 11771786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 13286144 - 13286212
Alignment:
Q  111 agttggtatatgcaatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaacaaaatg 179  Q
    ||||||||||  |||| ||||||||||||||| || | |||||||||| | ||||| ||||| ||||||    
T  13286144 agttggtatagacaatgcataatatatgcaagatccgggttcaaaccccggccaccgcaaaaaaaaatg 13286212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 37021403 - 37021358
Alignment:
Q  128 cataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaa 172  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||    
T  37021403 cataatatatgcaagattcagggttcaaaccccgaccaccacaaaa 37021358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 13864352 - 13864424
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaa-gttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    |||| |||||||||   ||||||||||||||||||| || | | |||||||||| ||||||||||||| ||||    
T  13864352 aactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaaccccgaccaccacaaaaaaaaa 13864424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 36047248 - 36047292
Alignment:
Q  129 ataatatatgcaagttcagagtt-caaaccctgaccaccacaaaa 172  Q
    |||||||||||||| | |||||| |||||||||||||||||||||    
T  36047248 ataatatatgcaaggttagagtttcaaaccctgaccaccacaaaa 36047292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 41650992 - 41650928
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaagttcagagttcaaaccctgaccaccacaa 170  Q
    |||| |||||||||   |||| ||||||||||||||| || |||||||||| | |||||||||||    
T  41650992 aactcagttggtatggacaatgcataatatatgcaaggtccgagttcaaacaccgaccaccacaa 41650928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 8174295 - 8174344
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaa 172  Q
    ||||| |||||||||||||| || || ||||||||| |||||||||||||    
T  8174295 caatatataatatatgcaaggtctgaattcaaaccccgaccaccacaaaa 8174344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 54018459 - 54018387
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaacaaaa 177  Q
    ||||||||||||||   |||| ||||| ||||||||| ||||| ||||||| |||| ||||||||||| ||||    
T  54018459 aacttagttggtatggacaatgcataaaatatgcaaggttcagggttcaaatcctggccaccacaaaaaaaaa 54018387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 1091187 - 1091260
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag-ttcagagttcaaaccctgaccaccacaaaacaaaat 178  Q
    |||| ||||||||||  |||| |||||| |||||||| ||| | |||||||| ||||||||||||||| |||||    
T  1091187 aactcagttggtatagacaatgcataatgtatgcaaggttcggggttcaaactctgaccaccacaaaaaaaaat 1091260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 6219898 - 6219849
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccaccacaaaa 172  Q
    |||||||||||||||| ||| || | ||||||| ||||||||||||||||    
T  6219898 caatacataatatatgtaaggtccgggttcaaatcctgaccaccacaaaa 6219849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 29506835 - 29506871
Alignment:
Q  106 aacttagttggtatatgcaatacataatatatgcaag 142  Q
    |||||||||||||||  ||||||||||||||||||||    
T  29506835 aacttagttggtatagacaatacataatatatgcaag 29506871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 3166 - 3210
Alignment:
Q  123 caatacataatatatgcaagttcagagttcaaaccctgaccacca 167  Q
    |||||||||||||||||||| || ||||||||||||  |||||||    
T  3166 caatacataatatatgcaaggtctgagttcaaacccgaaccacca 3210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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