View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_38 (Length: 250)
Name: NF1611_low_38
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_38 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 4368946 - 4369191
Alignment:
| Q |
5 |
gagtgagatgaagatcacaatagcttatcttgatctctcactgaaacgtgtaattgcttctattgcaagttaatgtgaaatagtggctcattgaaccaat |
104 |
Q |
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| T |
4368946 |
gagtgagatgaagatcacaatagcttatcttgatctctcactgaaatgtgtaattgcttctattgcaagtaaatgtgaaatagtggtttattgaaccaat |
4369045 |
T |
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| Q |
105 |
tctcttaccttttctcttgttttctattgttttatctcattttcaaccaattctctattacctcaacaacaaccacaccgaaggaggcgtgaggttctcc |
204 |
Q |
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| T |
4369046 |
tctcttaccttttctcttgttttcaattgttttatctcattttcaaccaattctctattacctcaacaacaaccacactgaaggaggcgtgagattctcc |
4369145 |
T |
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| Q |
205 |
tttgaagtactacatcagtggcgagaaagtgaatatagtgaaactc |
250 |
Q |
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| T |
4369146 |
tttgaagtactacattagtggcgagaaggtgaatatagtgaaactc |
4369191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 14644054 - 14644148
Alignment:
| Q |
68 |
tgcaagttaatgtgaaatagtggctcattgaaccaattctcttaccttttctcttgttttctattgttttatctcattttcaaccaattctctat |
162 |
Q |
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| T |
14644054 |
tgcaagttaatgagaaataatggttcatatatccaattctctttatttttctcttgttttctactgttttctctcattttctatcaattctctat |
14644148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 29997715 - 29997769
Alignment:
| Q |
53 |
tgtaattgcttctattgcaagttaatgtgaaatagtggctcattgaaccaattct |
107 |
Q |
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| T |
29997715 |
tgtaattgcttctattacaagttaatgtgaaataatggttcattgaaccaattct |
29997769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 14644259 - 14644354
Alignment:
| Q |
67 |
ttgcaagttaatgtgaaatagtggctcattgaaccaattctcttaccttttctcttgttttctattgttttatctcattttcaaccaattctctat |
162 |
Q |
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| T |
14644259 |
ttgcaagttaatgagaaataatggttaatagatccaattctctttatttttatcttgttttctactgttttctcccattttctatcaattctctat |
14644354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 14644465 - 14644557
Alignment:
| Q |
67 |
ttgcaagttaatgtgaaatagtggctcattgaaccaattctcttaccttttctcttgttttctattgttttatctcattttcaaccaattctc |
159 |
Q |
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| T |
14644465 |
ttgcaagttaatgaaaaataatggttcatagatccaattctctttatttttctcttgttttctactgttttcttccattttctatcaattctc |
14644557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 14643850 - 14643942
Alignment:
| Q |
70 |
caagttaatgtgaaatagtggctcattgaaccaattctcttaccttttctcttgttttctattgttttatctcattttcaaccaattctctat |
162 |
Q |
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| T |
14643850 |
caagttaatgagaaataatggttcatatatccaattctctttatttttctcttgttttctactgttttctcctattttctatcaattatctat |
14643942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 27908598 - 27908505
Alignment:
| Q |
53 |
tgtaattgcttctattgcaagttaatgtgaaatagtggctcattgaaccaattctcttaccttttctcttgttttctattgttttatctcattt |
146 |
Q |
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| T |
27908598 |
tgtaattgcttctattgcaaattaatgtgaaaaaatggttcattgaactaattgtctcattatttttcttgttttctcttactttctctcattt |
27908505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 22467000 - 22466944
Alignment:
| Q |
53 |
tgtaattgcttctattgcaagttaatgtgaaatagtggctcattgaaccaattctct |
109 |
Q |
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| T |
22467000 |
tgtaattgcttttattgcaagttaaaatgaaataatggttcattgaactaattctct |
22466944 |
T |
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