View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611_low_48 (Length: 238)

Name: NF1611_low_48
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611_low_48
NF1611_low_48
[»] chr4 (3 HSPs)
chr4 (35-222)||(4848741-4848928)
chr4 (59-146)||(5198115-5198202)
chr4 (153-222)||(5198896-5198964)
[»] chr8 (2 HSPs)
chr8 (102-177)||(32848027-32848102)
chr8 (133-177)||(18272607-18272651)
[»] chr6 (3 HSPs)
chr6 (66-147)||(8171228-8171309)
chr6 (185-222)||(10086110-10086147)
chr6 (186-222)||(6919368-6919404)
[»] chr7 (3 HSPs)
chr7 (44-146)||(40232503-40232605)
chr7 (38-99)||(29367313-29367374)
chr7 (186-222)||(39773215-39773251)
[»] chr2 (1 HSPs)
chr2 (50-104)||(8258821-8258875)
[»] chr5 (1 HSPs)
chr5 (35-177)||(34272333-34272476)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 4848928 - 4848741
Alignment:
Q  35 aatatagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattat 134  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4848928 aatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctattat 4848829  T
Q  135 tgatcaccatttctatacttatgcataatccaagcttccttgannnnnnnaatcactagccacatgtccatttgtgtcaaccaattat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||    
T  4848828 tgatcaccatttctatacttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattat 4848741  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 5198115 - 5198202
Alignment:
Q  59 agatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcaccattt 146  Q
    ||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5198115 agatttaagtcattactctacatgagagtactaaagagagaggagagatttcaacaattttctttatacctattattgatcaccattt 5198202  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 5198896 - 5198964
Alignment:
Q  153 ttatgcataatccaagcttccttgannnnnnnaatcactagccacatgtccatttgtgtcaaccaattat 222  Q
    ||||||||||||||||||||| |||       ||||||||||||||||||||||||  ||||||||||||    
T  5198896 ttatgcataatccaagcttccatgatttttt-aatcactagccacatgtccatttgcctcaaccaattat 5198964  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 32848027 - 32848102
Alignment:
Q  102 agagatttcaacaattttctttatacctattattgatcaccatttctatacttatgcataatccaagcttccttga 177  Q
    ||||| |||| |||||||||| ||||| ||||||||||| ||||||| || ||||||| ||||||| |||||||||    
T  32848027 agagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttga 32848102  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 18272651 - 18272607
Alignment:
Q  133 attgatcaccatttctatacttatgcataatccaagcttccttga 177  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  18272651 attgatcatcatttcgttatttatgcataatccaagcttccttga 18272607  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 8171309 - 8171228
Alignment:
Q  66 agtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcaccatttc 147  Q
    |||||||||| ||| ||||| |||||||||||||  ||||| ||||  |||||||| |||||| ||||||||||| ||||||    
T  8171309 agtcattactctactagagaatactaaagagagaggagagacttcataaattttctatatacccattattgatcaacatttc 8171228  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 10086147 - 10086110
Alignment:
Q  185 aatcactagccacatgtccatttgtgtcaaccaattat 222  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  10086147 aatcactagccacatgtccatttatctcaaccaattat 10086110  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 6919404 - 6919368
Alignment:
Q  186 atcactagccacatgtccatttgtgtcaaccaattat 222  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6919404 atcactagccacatgtccatttgcctcaaccaattat 6919368  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 40232503 - 40232605
Alignment:
Q  44 gaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttatacctattattgatcacca 143  Q
    |||||| ||||| || || |||| |||||||||||  |  ||||||| || ||||||||||||||| | |||||||| || |||| ||||||||||| ||    
T  40232503 gaagacaaagtcgaatgacttaaatcattactgtattattgagtactcaaaagagaaaagagatttaatcaattttccttgtacccattattgatcatca 40232602  T
Q  144 ttt 146  Q
    |||    
T  40232603 ttt 40232605  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 29367313 - 29367374
Alignment:
Q  38 atagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaagagaga 99  Q
    ||||| ||||||||||||  |||| ||||||||||||| ||| |||||||| ||||||||||    
T  29367313 atagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagaga 29367374  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 39773251 - 39773215
Alignment:
Q  186 atcactagccacatgtccatttgtgtcaaccaattat 222  Q
    |||||||||||||||||||||| | ||||||||||||    
T  39773251 atcactagccacatgtccatttttctcaaccaattat 39773215  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 8258875 - 8258821
Alignment:
Q  50 taagtctaaagatttaagtcattactgtacaagagagtactaaagagagaaaaga 104  Q
    |||||| ||||| || |||||||||| |||||||||||| |||||| ||||||||    
T  8258875 taagtccaaagacttgagtcattactctacaagagagtattaaagacagaaaaga 8258821  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 34272476 - 34272333
Alignment:
Q  35 aatatagaggaagactaagtctaaagatttaagtcattactgtacaagagagtactaaa--gagagaaaagagatttcaacaattttctttatacctatt 132  Q
    |||||| | |||||||||||| ||||| ||||||||||||| | | |||||||||||||  |||||| |  | | |||| |||||||||| ||||| |||    
T  34272476 aatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggagagagagaaaaattcatcaattttcttcatacccatt 34272378  T
Q  133 attgatcaccatttctatacttatgcataatccaagcttccttga 177  Q
    |||  | | ||||| | || ||||||| |||| |||| |||||||    
T  34272377 attatttatcatttttctatttatgcacaatctaagcatccttga 34272333  T

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