View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_49 (Length: 237)
Name: NF1611_low_49
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_49 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31106697 - 31106478
Alignment:
| Q |
1 |
tctccaaacagatccaaagtttcttgttgtttataggtcttcgtatgctgagaatttgcatgttattttttagaccttatattaagaagacgtctgagag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31106697 |
tctcaaaacagatccaaagtttcttgttgtttataggtattcgtatgctgagaatttgtatattattttttagaccttatattaagaagacgtctgagag |
31106598 |
T |
|
| Q |
101 |
gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106597 |
gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa |
31106498 |
T |
|
| Q |
201 |
tgcattatgtatttaccatt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
31106497 |
tgcattatgtatttaccatt |
31106478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 31094776 - 31094852
Alignment:
| Q |
143 |
gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccat |
219 |
Q |
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||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||| |||||||||||| |||| |
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| T |
31094776 |
gatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatttcccat |
31094852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 21150284 - 21150347
Alignment:
| Q |
150 |
cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt |
213 |
Q |
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|||| |||||||||||||||||||| |||||||||||| ||||| ||||||| |||||| |||| |
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| T |
21150284 |
ctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatatatt |
21150347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 21181570 - 21181647
Alignment:
| Q |
143 |
gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccatt |
220 |
Q |
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|||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| ||| ||||| | ||||||||| |
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| T |
21181570 |
gatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacattaattgtttaccatt |
21181647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 21267171 - 21267230
Alignment:
| Q |
151 |
ttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgt |
210 |
Q |
| |
|
|||||||||||||||| |||||| |||| || |||| |||||||||||||||||||||| |
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|
| T |
21267171 |
ttttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattatgt |
21267230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 21314582 - 21314650
Alignment:
| Q |
150 |
cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttacca |
218 |
Q |
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|||||||| ||||| || ||||| | || || |||||| |||||||| |||||||||||| |||||||| |
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| T |
21314582 |
cttttttatatgcatattaaacattgtcccacttaacagaatcatttcaaatgcattatgaatttacca |
21314650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3488 - 3568
Alignment:
| Q |
139 |
tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccat |
219 |
Q |
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||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
3488 |
tgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatttcccat |
3568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 65257 - 65187
Alignment:
| Q |
150 |
cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccatt |
220 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| |
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| T |
65257 |
cttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatttaccatt |
65187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 62062 - 62018
Alignment:
| Q |
176 |
tcacatttaacaaaatcattttaaatgcattatgtatttaccatt |
220 |
Q |
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||||||||||||||||||||| |||| ||| ||| |||||||||| |
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| T |
62062 |
tcacatttaacaaaatcatttcaaatacatgatgaatttaccatt |
62018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 3492 - 3452
Alignment:
| Q |
176 |
tcacatttaacaaaatcattttaaatgcattatgtatttac |
216 |
Q |
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|||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
3492 |
tcacatttaacagaatcattttgaatacattatgtatttac |
3452 |
T |
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