View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_5 (Length: 556)
Name: NF1611_low_5
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 111 - 538
Target Start/End: Complemental strand, 44083268 - 44082825
Alignment:
| Q |
111 |
taactcattcatttatctatacattgtcaatatgtagtttactattgggttacgaagtgaaccctgagaatcatccacgttcaaataaaagcatacatac |
210 |
Q |
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| T |
44083268 |
taactcattcatttatctatacattgtcaatatgtagtttattattgggttacgaagtgagctctgagaatcatccacgttcaaataaaagtatacatac |
44083169 |
T |
|
| Q |
211 |
aagtaggaaatatatcatactcttacctaaaatctaaagacgatatgtttatgagtatttcacttataaagtgttcaacctctatgaaaagtgagacata |
310 |
Q |
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| T |
44083168 |
aagtaggaaagatatcatactcttacctaaaatctaaagatgatgtgtttatgagtaattcacttataaagcgttcaacctctataaaaaatgagacata |
44083069 |
T |
|
| Q |
311 |
taattcacacttaaacacaaaatttatattggtgttgaaagtagaaaccatgatagagtgctttacatgtcgttgctcttatctgcaattcgctgttagg |
410 |
Q |
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| T |
44083068 |
taattcacacttaaagacaaaatttatattggtgttgaaagtagaaaccatgatagagtgctttacatgtcgttgctcttatctgcaattcgctgttagg |
44082969 |
T |
|
| Q |
411 |
tccatgagaatttttcactat----------------gccaatcttatctataatttttctcctttctttttgaaactaatatttatatatgatgctaat |
494 |
Q |
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| T |
44082968 |
tccatgagaatttttcactatgccatcattttgacatgccaatcttatctataatttttctcctttctttttgaaactaatatttatatatgttgctaat |
44082869 |
T |
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| Q |
495 |
ttcaatctttactttcattgacattaaattatatttgctattgt |
538 |
Q |
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| T |
44082868 |
ttcaatctttactttcattgacattaaattatatttgctattgt |
44082825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 44083357 - 44083320
Alignment:
| Q |
76 |
gataattacacgatcaaaatag-ttttgatttaaaata |
112 |
Q |
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| T |
44083357 |
gataattacacgatcaaaatagtttttgatttaaaata |
44083320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 44092035 - 44092003
Alignment:
| Q |
430 |
atgccaatcttatctataatttttctcctttct |
462 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
44092035 |
atgccaatcatatctataatttttctcctttct |
44092003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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