View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1611_low_50 (Length: 237)
Name: NF1611_low_50
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_50 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 6257136 - 6257357
Alignment:
| Q |
16 |
cttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcagacaaagaccaatactaaggtcaagatgaaggtgcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6257136 |
cttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcagacaaagaccaatactaaggtcaagatgaaggtgcac |
6257235 |
T |
|
| Q |
116 |
catatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctcaactcttgtttggatttagtgaaaatggagaatgag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6257236 |
catatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctcaactcttgtttggattcagtgaaaatggagaatgag |
6257335 |
T |
|
| Q |
216 |
atggaatggaagaaaatatctc |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6257336 |
atggaatggaagaaaatatctc |
6257357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University