View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_6 (Length: 542)
Name: NF1611_low_6
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 40660961 - 40661480
Alignment:
| Q |
18 |
ggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgtattgttttcctttaaggcacatcttgtgcgtaatgg |
117 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660961 |
ggtataccacaactttgtaattgtgcttcttgcttttatcatctctattattttgactcattgtattgttttcctttaaggcacatcttgtgcgtaatgg |
40661060 |
T |
|
| Q |
118 |
ggagggttttgaatatatannnnnnn-acttttgacttcttnnnnnnnnnnnntcacgttgttggggtaaatgaaggcagggtattcagcattagcatga |
216 |
Q |
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||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40661061 |
ggagggttttgaatatatatattttttacttttgacttcttaaaaaaaaaaaatcatgttgttgaggtaaatgaaggcagggtattcagcattagcatga |
40661160 |
T |
|
| Q |
217 |
taccaggactgggtctgagaatcttgcatgtatatgccagctatggtttttggttgatacaaaggttaatagtttatgaaaggggggaggatggtacgag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40661161 |
taccaggactgggtctgagaatcttgcatgtatatgccagctatggtttttggttgatacaaaggttaatagtttatgaaaggggggaggatggtacgag |
40661260 |
T |
|
| Q |
317 |
ttgttgtttgatgcaggaagaagaaagtagtactagtagcatatggtgtcattcaaaacaaaaagtactagtagtatatggatctgctatgaacataata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40661261 |
ttgttgtttgatgcaggaagaagaaagtagtactagtagcatatggtggcattcaaaacaaaaagtactagtagtatatggatctgctatgaacataata |
40661360 |
T |
|
| Q |
417 |
tcttcatttgattataagagtagtttggtgtaagggttggttttggatcacaatatttgctgatgaatgctgcagaatggtttgcctaagtat-aaattt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40661361 |
tcttcatttgattataagagtagtttggtgtaagggttgattttggatcacaatatttgctgatgaatgctgcagaatggtttgcctaagtataaaattt |
40661460 |
T |
|
| Q |
516 |
tggggtgtgtgttgatgatg |
535 |
Q |
| |
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| T |
40661461 |
tggggtgtgtgttgatgatg |
40661480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 15961087 - 15960970
Alignment:
| Q |
18 |
ggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgtattgttttcctttaaggcacatcttgtgcgtaatgg |
117 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||| |||||| |||||| || |||| ||||||| |||||| || |||||| |||||| ||||||| |
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| T |
15961087 |
ggtacaccacaagtttgtaattgtagttcttgcttttgtcatctttattatgtttactctttgtatttttttcccttttggcacaccttgtgtgtaatgg |
15960988 |
T |
|
| Q |
118 |
ggagggttttgaatatat |
135 |
Q |
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| | | |||| ||||||| |
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| T |
15960987 |
gtatgatttttaatatat |
15960970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 38087629 - 38087562
Alignment:
| Q |
17 |
aggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgtatt |
84 |
Q |
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| T |
38087629 |
aggtacaccaaaactttgtaattgtggttcttacttctgtcatctttaatattttgactctttgtatt |
38087562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 33964958 - 33964902
Alignment:
| Q |
20 |
tacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactc |
76 |
Q |
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||||||||||||||||||| || ||||| |||| ||||||| |||||||||||||| |
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| T |
33964958 |
tacaccacaactttgtaatagttattcttactttcatcatctttattattttgactc |
33964902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 39723922 - 39723973
Alignment:
| Q |
23 |
accacaactttgtaattgtggttcttgcttttatcatctctattattttgac |
74 |
Q |
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|||||||||||||||| |||||||||| |||| | |||| |||||||||||| |
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| T |
39723922 |
accacaactttgtaatcgtggttcttgtttttgttatctttattattttgac |
39723973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 50481775 - 50481712
Alignment:
| Q |
27 |
caactttgtaattgtggttcttgc-ttttatcatctctattattttgactcattgtattgtttt |
89 |
Q |
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||||||||||||| |||||||||| |||| |||||| ||||||| |||||| ||||||| |||| |
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| T |
50481775 |
caactttgtaattttggttcttgctttttgtcatctttattattatgactctttgtattttttt |
50481712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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