View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_7 (Length: 536)
Name: NF1611_low_7
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Complemental strand, 1217421 - 1216902
Alignment:
| Q |
14 |
cattaataactccctaaaaatattgtcataaaaatat----taccccatcaccagatatattagccacttggacaataacacggccaaaattctctccct |
109 |
Q |
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| T |
1217421 |
cattaataactccctaaaaatattgtcataaaaatatatattaccccatcaccagatatatcagccacttggacaataacacggccaaaattctctccct |
1217322 |
T |
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| Q |
110 |
tggaatctcgaatttccacgatcaaat---------gactatctggaaaactgtaaaggtagtcagaaaaattcaaccagcataatgttgaaagattnnn |
200 |
Q |
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| T |
1217321 |
tggaatctcgaatttccacgatcaaataatctctgtgactatctggaaaactgtaaaggtagtcagaaaaattcaaccagcataatgttgaaagattaaa |
1217222 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnnngaacttacagcgtatgagcgtcacgagatccaggatgcaacttaacggcatcttcttcaggtgagtttttgagctttaaaaca |
300 |
Q |
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| T |
1217221 |
aaactacaaaaagaaaagaacttgcagcgtatgagcgtcacgagatccaggatgcaacttaacggcatcttcttcaggtgagtttttgagctttaaaaca |
1217122 |
T |
|
| Q |
301 |
catgagaatttctctagtgatatacacataagcagaaaataagataaatggaaaatttgaagttcaaatcttgcatgacttgagatcacatggaattcct |
400 |
Q |
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| T |
1217121 |
catgagaatttctctagtgatatacacataagcagaaaataagataaatggaaaatttgaagttcaaatcttgcacgacttgagatcacatggaattcct |
1217022 |
T |
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| Q |
401 |
tttaattataatgcagactgcattttcacataccttgcaaaacttcagatcgcaaggattttgttttaattatattcgtcatcatagataacatgttgca |
500 |
Q |
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| T |
1217021 |
tttaattataatgcagactgcattttcacataccttgcaaaacttcagattgcaaggattttgttttaattatattcgtcatcatagataacatgctgca |
1216922 |
T |
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| Q |
501 |
gccagttggagggtccaggc |
520 |
Q |
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| T |
1216921 |
gccagttggagcgtccaggc |
1216902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 27745534 - 27745375
Alignment:
| Q |
41 |
ataaaaatattaccccatcaccagatatattagccacttggacaataacacggccaaaattctctcccttggaatctcgaatttccacgatcaaat---- |
136 |
Q |
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|||||||||||||| || | ||| |||| |||||||||||||| |||||| ||||||| || ||||||||||||| ||| ||| | || ||||| |
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| T |
27745534 |
ataaaaatattaccggattatcagctatagcagccacttggacaagaacacgcccaaaatgctttcccttggaatcttgaacttcaatgagcaaatcatc |
27745435 |
T |
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| Q |
137 |
-----gactatctggaaaactgtaaa---ggtagtcagaa-aaattcaaccagcataatg |
187 |
Q |
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| T |
27745434 |
tccaagactatctggaaaactgtaaatgtagtagtcagaatatattcaaccagcataatg |
27745375 |
T |
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