View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611_low_9 (Length: 519)
Name: NF1611_low_9
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 32844591 - 32845075
Alignment:
| Q |
17 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844591 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
32844690 |
T |
|
| Q |
117 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32844691 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgttgtgtatgtttgcaagtattgttt |
32844790 |
T |
|
| Q |
217 |
tgctggccttttccacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccccctagaggactcgataatacc |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32844791 |
tgctggctttttccacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccctctagaggactcgataatacc |
32844890 |
T |
|
| Q |
317 |
cttctagaaaaattccccactttcctctactcctccgtgaaagaccttcgcaaggaaaagagttatagcttagaatgtgccatttgcttgatagagtttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32844891 |
cttctagaaaaattccccactttcctctactcctccgtgaaagaccttcgtaaggaaaagagttatagcttagaatgtgccatttgcttgctagagtttg |
32844990 |
T |
|
| Q |
417 |
atgatgatagcatgcttcgtctcctaaccatttgttgtcatgttttccaccaagaatgtattgacctatggcttgaatctcataa |
501 |
Q |
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| T |
32844991 |
atgatgatagcatgcttcgtctcctaaccatttgttgtcatgttttccaccaagaatgtattgacctatggcttgaatctcataa |
32845075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 493
Target Start/End: Original strand, 27744924 - 27745387
Alignment:
| Q |
30 |
cttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccccaacatacaagac |
129 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||| || ||||||||| ||| || ||||||||||| |||||||||| ||| || | ||||| |
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| T |
27744924 |
cttgaaaaccaataacagtccattgttgatagtttctcaattcgacaatgtctttatcagaatctaagtacgaccccccaccggctccagcacataagac |
27745023 |
T |
|
| Q |
130 |
cccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttttgctggccttttc |
229 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| ||||| ||| ||||| |
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| T |
27745024 |
cccaccggcactagtagccttcaccctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttc |
27745123 |
T |
|
| Q |
230 |
cacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccccctagaggactcgataatacccttctagaaaaat |
329 |
Q |
| |
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|| | ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || | || |
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| T |
27745124 |
catatgtgggccttgcatcgcacggcctcaggatccctcgttcgtctctcacctgataggtcaccccctagaggactcaacaatacccttataaatggat |
27745223 |
T |
|
| Q |
330 |
tccccactttcctctactcctccgtgaaagaccttcgcaaggaaaagagttatagcttagaatgtgccatttgcttgatagagtttgatgatgatagcat |
429 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||| || || |||||||| |
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| T |
27745224 |
tccccactttcctctactctgatgtgaaagaccaccgcaaggaaaaaagttacagcttagaatgtgctatttgcttgctagagttcgaggacgatagcat |
27745323 |
T |
|
| Q |
430 |
gcttcgtctcctaaccatttgttgtcatgttttccaccaagaatgtattgacctatggcttgaa |
493 |
Q |
| |
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||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
27745324 |
gcttcgtcttctaactatttgtttccatgttttccaccaagaatgtatcgacctatggtttgaa |
27745387 |
T |
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